Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| nfsA | rimK | b0851 | b0852 | Nitroreductase a, nadph-dependent, fmn-dependent; Catalyzes the reduction of nitroaromatic compounds using NADPH. Has a broad electron acceptor specificity. Reduces nitrofurazone by a ping-pong bi-bi mechanism possibly to generate a two-electron transfer product. Major oxygen-insensitive nitroreductase in E.coli | Ribosomal protein s6--l-glutamate ligase; Is an L-glutamate ligase that catalyzes the ATP-dependent post-translational addition of glutamate residues to the C-terminus of ribosomal protein S6 (RpsF). Is also able to catalyze the synthesis of poly-alpha-glutamate in vitro, via ATP hydrolysis from unprotected glutamate as substrate. The number of glutamate residues added to either RpsF or to poly-alpha-glutamate changes with pH | 0.848 |
| nfsA | ybjC | b0851 | b0850 | Nitroreductase a, nadph-dependent, fmn-dependent; Catalyzes the reduction of nitroaromatic compounds using NADPH. Has a broad electron acceptor specificity. Reduces nitrofurazone by a ping-pong bi-bi mechanism possibly to generate a two-electron transfer product. Major oxygen-insensitive nitroreductase in E.coli | annotation not available | 0.995 |
| nfsA | ybjN | b0851 | b0853 | Nitroreductase a, nadph-dependent, fmn-dependent; Catalyzes the reduction of nitroaromatic compounds using NADPH. Has a broad electron acceptor specificity. Reduces nitrofurazone by a ping-pong bi-bi mechanism possibly to generate a two-electron transfer product. Major oxygen-insensitive nitroreductase in E.coli | Negative regulator of motility; Uncharacterized protein YbjN; Putative sensory transduction regulator | 0.797 |
| rimK | nfsA | b0852 | b0851 | Ribosomal protein s6--l-glutamate ligase; Is an L-glutamate ligase that catalyzes the ATP-dependent post-translational addition of glutamate residues to the C-terminus of ribosomal protein S6 (RpsF). Is also able to catalyze the synthesis of poly-alpha-glutamate in vitro, via ATP hydrolysis from unprotected glutamate as substrate. The number of glutamate residues added to either RpsF or to poly-alpha-glutamate changes with pH | Nitroreductase a, nadph-dependent, fmn-dependent; Catalyzes the reduction of nitroaromatic compounds using NADPH. Has a broad electron acceptor specificity. Reduces nitrofurazone by a ping-pong bi-bi mechanism possibly to generate a two-electron transfer product. Major oxygen-insensitive nitroreductase in E.coli | 0.848 |
| rimK | ybjC | b0852 | b0850 | Ribosomal protein s6--l-glutamate ligase; Is an L-glutamate ligase that catalyzes the ATP-dependent post-translational addition of glutamate residues to the C-terminus of ribosomal protein S6 (RpsF). Is also able to catalyze the synthesis of poly-alpha-glutamate in vitro, via ATP hydrolysis from unprotected glutamate as substrate. The number of glutamate residues added to either RpsF or to poly-alpha-glutamate changes with pH | annotation not available | 0.813 |
| rimK | ybjN | b0852 | b0853 | Ribosomal protein s6--l-glutamate ligase; Is an L-glutamate ligase that catalyzes the ATP-dependent post-translational addition of glutamate residues to the C-terminus of ribosomal protein S6 (RpsF). Is also able to catalyze the synthesis of poly-alpha-glutamate in vitro, via ATP hydrolysis from unprotected glutamate as substrate. The number of glutamate residues added to either RpsF or to poly-alpha-glutamate changes with pH | Negative regulator of motility; Uncharacterized protein YbjN; Putative sensory transduction regulator | 0.963 |
| yaeH | ybjC | b0163 | b0850 | DUF3461 domain-containing protein YaeH; Belongs to the UPF0325 family | annotation not available | 0.609 |
| yaeH | ybjM | b0163 | b0848 | DUF3461 domain-containing protein YaeH; Belongs to the UPF0325 family | annotation not available | 0.783 |
| yaeH | ybjN | b0163 | b0853 | DUF3461 domain-containing protein YaeH; Belongs to the UPF0325 family | Negative regulator of motility; Uncharacterized protein YbjN; Putative sensory transduction regulator | 0.424 |
| yaeH | ydcH | b0163 | b1426 | DUF3461 domain-containing protein YaeH; Belongs to the UPF0325 family | annotation not available | 0.887 |
| ybjC | nfsA | b0850 | b0851 | annotation not available | Nitroreductase a, nadph-dependent, fmn-dependent; Catalyzes the reduction of nitroaromatic compounds using NADPH. Has a broad electron acceptor specificity. Reduces nitrofurazone by a ping-pong bi-bi mechanism possibly to generate a two-electron transfer product. Major oxygen-insensitive nitroreductase in E.coli | 0.995 |
| ybjC | rimK | b0850 | b0852 | annotation not available | Ribosomal protein s6--l-glutamate ligase; Is an L-glutamate ligase that catalyzes the ATP-dependent post-translational addition of glutamate residues to the C-terminus of ribosomal protein S6 (RpsF). Is also able to catalyze the synthesis of poly-alpha-glutamate in vitro, via ATP hydrolysis from unprotected glutamate as substrate. The number of glutamate residues added to either RpsF or to poly-alpha-glutamate changes with pH | 0.813 |
| ybjC | yaeH | b0850 | b0163 | annotation not available | DUF3461 domain-containing protein YaeH; Belongs to the UPF0325 family | 0.609 |
| ybjC | ybjM | b0850 | b0848 | annotation not available | annotation not available | 0.672 |
| ybjC | ybjN | b0850 | b0853 | annotation not available | Negative regulator of motility; Uncharacterized protein YbjN; Putative sensory transduction regulator | 0.759 |
| ybjC | ydcH | b0850 | b1426 | annotation not available | annotation not available | 0.606 |
| ybjC | yfcR | b0850 | b2335 | annotation not available | Putative fimbrial-like adhesin protein; Part of the yfcOPQRSUV fimbrial operon. Could contribute to adhesion to various surfaces in specific environmental niches. Increases adhesion to eukaryotic T24 bladder epithelial cells in the absence of fim genes | 0.638 |
| ybjC | yghW | b0850 | b2998 | annotation not available | annotation not available | 0.609 |
| ybjC | yjcB | b0850 | b4060 | annotation not available | annotation not available | 0.738 |
| ybjC | ypeC | b0850 | b2390 | annotation not available | DUF2502 family putative periplasmic protein; To E.coli YaaX | 0.793 |
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