STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycaMInner membrane transporter YcaM; Putative transport; Not classified (476 aa)    
Predicted Functional Partners:
ycaD
Uncharacterized MFS-type transporter YcaD; Putative transport; Not classified
  
 
 0.889
yieK
Putative glucosamine-6-phosphate deaminase yiek; Belongs to the glucosamine/galactosamine-6-phosphate isomerase family
      
 0.824
yoaB
Putative reactive intermediate deaminase; RutC family protein YoaB; Putative enzyme; Not classified; Belongs to the RutC family
   
  
 0.783
yddA
Vitamin b12/bleomycin/antimicrobial peptide transport system atp-binding/permease protein; Inner membrane ABC transporter ATP-binding protein YddA; Putative transport; Not classified
   
 
 0.748
ynfA
annotation not available
      
 0.732
yddB
Putative tonb-dependent outer membrane receptor; To H.influenzae HI_1369
      
 0.731
elfA
Putative laminin-binding fimbrial subunit; Part of the elfADCG-ycbUVF fimbrial operon, which promotes adhesion of bacteria to different abiotic surfaces. ElfA is the major fimbrial subunit produced by this operon
  
   
 0.707
ydcF
DUF218 superfamily protein, SAM-binding; Binds S-adenosyl-L-methionine (AdoMet)
  
   
 0.658
yliF
Putative membrane-anchored diguanylate cyclase; Catalyzes the synthesis of cyclic-di-GMP (c-di-GMP) via the condensation of 2 GTP molecules
      
 0.620
kch
Voltage-gated potassium channel; K(+)-specific ion channel. May play a role in the defense against osmotic shock
      
 0.617
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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