STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yceMBelongs to the Gfo/Idh/MocA family (307 aa)    
Predicted Functional Partners:
yceH
Belongs to the UPF0502 family
 
    0.977
ycfZ
Inner membrane protein YcfZ; Putative factor; Not classified
   
  
 0.878
rimJ
Acetylates the N-terminal alanine of ribosomal protein S5 . Also plays a role in maturation of the 30S ribosomal subunit . Plays a role in the temperature regulation of pap pilin transcription . ECO:0000269|PubMed:18466225, ECO:0000269|PubMed:20176963,
       0.844
murJ
Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane. ECO:0000269|PubMed:18708495, ECO:0000269|PubMed:18832143,
     
 0.838
ydgJ
annotation not available
  
   
 0.718
yhhX
Belongs to the Gfo/Idh/MocA family. Biliverdin reductase subfamily
  
   
 0.691
ygjR
Belongs to the Gfo/Idh/MocA family
  
  
 0.687
cheA
Involved in the transmission of sensory signals from the chemoreceptors to the flagellar motors. CheA is autophosphorylated; it can transfer its phosphate group to either CheB or CheY
 
      0.686
ycjS
Catalyzes the NADH-dependent reduction of the oxo group at C3 of 3-dehydro-D-glucosides leading to D-glucosides. Probably functions in a metabolic pathway that transforms D-gulosides to D-glucosides. Can use 3-dehydro-D-glucose, methyl alpha-3-dehydro-D-glucoside and methyl beta-3-dehydro-D-glucoside as substrates in vitro. However, the actual specific physiological substrates for this metabolic pathway are unknown. To a lesser extent, is also able to catalyze the reverse reactions, i.e. the NAD(+)-dependent oxidation of the hydroxyl group at C3 of D-glucosides leading to 3-dehydro-D-g [...]
  
   
 0.655
yggP
To K.pneumoniae SorE
   
  
 0.632
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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