STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
croEE14 prophage; putative DNA-binding transcriptional regulator. (66 aa)    
Predicted Functional Partners:
ymfL
E14 prophage; putative DNA-binding transcriptional regulator.
  
  
 0.979
ymfJ
E14 prophage; uncharacterized protein.
  
  
 0.963
intE
E14 prophage; Integrase from the cryptic lambdoic prophage e14. Integrase is necessary for integration of the phage into the host genome by site- specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome.
   
  
 0.960
xisE
E14 prophage; putative excisionase; To lambdoid phages excisionases.
   
  
 0.948
ymfM
E14 prophage; uncharacterized protein.
  
    0.928
cohE
E14 prophage; repressor protein phage e14.
  
  
 0.888
ymfR
Uncharacterized protein YmfR; Pseudogene, phage terminase protein A family, e14 prophage;Phage or Prophage Related.
   
  
 0.869
stfP
E14 prophage; uncharacterized protein; To E.coli YfdL and M.jannaschii MJ0347.
   
  
 0.756
ymfQ
Uncharacterized protein YmfQ; Pseudogene, e14 prophage;Phage or Prophage Related; To phage Mu protein gp48 and H.influenzae HI_1521.
   
  
 0.742
tfaP
E14 prophage; uncharacterized protein; To E.coli YfdK.
   
  
 0.736
Your Current Organism:
Escherichia coli K12
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.