STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ymfLUncharacterized protein YmfL; Phage or Prophage Related (185 aa)    
Predicted Functional Partners:
ymfM
Uncharacterized protein YmfM; Phage or Prophage Related
  
  
 0.990
croE
Prophage transcriptional regulatory protein; Phage or Prophage Related
  
  
 0.972
yfdR
Uncharacterized protein YfdR; Phage or Prophage Related
  
   
 0.947
ymfJ
Uncharacterized protein YmfJ; Phage or Prophage Related
  
  
 0.935
yfdQ
Uncharacterized protein YfdQ; Phage or Prophage Related
  
   
 0.894
xisE
Prophage excisionase-like protein; Phage or Prophage Related; To lambdoid phages excisionases
   
  
 0.884
ygcO
Could be a 3Fe-4S cluster-containing protein. Probably participates in a redox process with YgcN, YgcQ and YgcR
      
 0.829
yfdP
To phage T4 y06Q
  
   
 0.792
kilR
Causes inhibition of cell division. At high levels of expression, can also abolish the rod shape of the cells. Division inhibition by KilR can be relieved by overexpression of the cell division protein FtsZ
      
 0.790
yfdS
Uncharacterized protein YfdS; Phage or Prophage Related; To the N-terminal region of phage HK97/HK620 Gp37/hpaH
      
 0.739
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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