ymfQ protein (Escherichia coli K12 MG1655) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ymfQ

E14 prophage; conserved protein YmfQ; To phage Mu protein gp48 and H.influenzae HI_1521 (194 aa)

Predicted Functional Partners:

stfP

0.995

tfaP

0.987

yfdK

0.922

tfaE

0.850

hyfJ

0.816

yfdC

0.784

hyfR

0.705

yfgO

0.640

ymfE

0.609

croE

0.528

Your Current Organism:

Escherichia coli K12 MG1655

NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
croE	tfaE	b1146	b1156	E14 prophage; putative DNA-binding transcriptional regulator YmfT; Prophage transcriptional regulatory protein; Phage or Prophage Related	E14 prophage; putative tail fiber assembly protein TfaE; Prophage tail fiber assembly protein homolog TfaE; Phage or Prophage Related	0.409
croE	tfaP	b1146	b1155	E14 prophage; putative DNA-binding transcriptional regulator YmfT; Prophage transcriptional regulatory protein; Phage or Prophage Related	E14 prophage; putative tail fiber assembly protein TfaP; Uncharacterized protein YmfS; Phage or Prophage Related; To E.coli YfdK	0.671
croE	ymfE	b1146	b1138	E14 prophage; putative DNA-binding transcriptional regulator YmfT; Prophage transcriptional regulatory protein; Phage or Prophage Related	E14 prophage; uncharacterized protein YmfE; Uncharacterized protein YmfE; Phage or Prophage Related	0.623
croE	ymfQ	b1146	b1153	E14 prophage; putative DNA-binding transcriptional regulator YmfT; Prophage transcriptional regulatory protein; Phage or Prophage Related	E14 prophage; conserved protein YmfQ; To phage Mu protein gp48 and H.influenzae HI_1521	0.528
hyfJ	hyfR	b2490	b2491	Putative processing element hydrogenase 4; Possible component of hydrogenase 4	Dna-binding transcriptional activator hyfr; A transcriptional activator of its own operon; when overexpressed operon expression is strongly enhanced by low pH (under pH 6.0), strongly inhibited by O(2) but only weakly stimulated by fumarate . Expression in situ is very weak	0.965
hyfJ	stfP	b2490	b1154	Putative processing element hydrogenase 4; Possible component of hydrogenase 4	Uncharacterized protein StfP; Phage or Prophage Related; To E.coli YfdL and M.jannaschii MJ0347	0.633
hyfJ	yfdC	b2490	b2347	Putative processing element hydrogenase 4; Possible component of hydrogenase 4	Formate-nitrite transporter family protein; Inner membrane protein YfdC; Putative transport protein	0.733
hyfJ	yfdK	b2490	b2354	Putative processing element hydrogenase 4; Possible component of hydrogenase 4	CPS-53 (KpLE1) prophage; putative tail fiber assembly protein YfdK; To E.coli YmfS	0.811
hyfJ	yfgO	b2490	b2493	Putative processing element hydrogenase 4; Possible component of hydrogenase 4	Putative upf0118 family inner membrane permease; Putative permease	0.560
hyfJ	ymfQ	b2490	b1153	Putative processing element hydrogenase 4; Possible component of hydrogenase 4	E14 prophage; conserved protein YmfQ; To phage Mu protein gp48 and H.influenzae HI_1521	0.816
hyfR	hyfJ	b2491	b2490	Dna-binding transcriptional activator hyfr; A transcriptional activator of its own operon; when overexpressed operon expression is strongly enhanced by low pH (under pH 6.0), strongly inhibited by O(2) but only weakly stimulated by fumarate . Expression in situ is very weak	Putative processing element hydrogenase 4; Possible component of hydrogenase 4	0.965
hyfR	stfP	b2491	b1154	Dna-binding transcriptional activator hyfr; A transcriptional activator of its own operon; when overexpressed operon expression is strongly enhanced by low pH (under pH 6.0), strongly inhibited by O(2) but only weakly stimulated by fumarate . Expression in situ is very weak	Uncharacterized protein StfP; Phage or Prophage Related; To E.coli YfdL and M.jannaschii MJ0347	0.478
hyfR	yfdC	b2491	b2347	Dna-binding transcriptional activator hyfr; A transcriptional activator of its own operon; when overexpressed operon expression is strongly enhanced by low pH (under pH 6.0), strongly inhibited by O(2) but only weakly stimulated by fumarate . Expression in situ is very weak	Formate-nitrite transporter family protein; Inner membrane protein YfdC; Putative transport protein	0.561
hyfR	yfdK	b2491	b2354	Dna-binding transcriptional activator hyfr; A transcriptional activator of its own operon; when overexpressed operon expression is strongly enhanced by low pH (under pH 6.0), strongly inhibited by O(2) but only weakly stimulated by fumarate . Expression in situ is very weak	CPS-53 (KpLE1) prophage; putative tail fiber assembly protein YfdK; To E.coli YmfS	0.641
hyfR	ymfQ	b2491	b1153	Dna-binding transcriptional activator hyfr; A transcriptional activator of its own operon; when overexpressed operon expression is strongly enhanced by low pH (under pH 6.0), strongly inhibited by O(2) but only weakly stimulated by fumarate . Expression in situ is very weak	E14 prophage; conserved protein YmfQ; To phage Mu protein gp48 and H.influenzae HI_1521	0.705
stfP	hyfJ	b1154	b2490	Uncharacterized protein StfP; Phage or Prophage Related; To E.coli YfdL and M.jannaschii MJ0347	Putative processing element hydrogenase 4; Possible component of hydrogenase 4	0.633
stfP	hyfR	b1154	b2491	Uncharacterized protein StfP; Phage or Prophage Related; To E.coli YfdL and M.jannaschii MJ0347	Dna-binding transcriptional activator hyfr; A transcriptional activator of its own operon; when overexpressed operon expression is strongly enhanced by low pH (under pH 6.0), strongly inhibited by O(2) but only weakly stimulated by fumarate . Expression in situ is very weak	0.478
stfP	tfaE	b1154	b1156	Uncharacterized protein StfP; Phage or Prophage Related; To E.coli YfdL and M.jannaschii MJ0347	E14 prophage; putative tail fiber assembly protein TfaE; Prophage tail fiber assembly protein homolog TfaE; Phage or Prophage Related	0.719
stfP	tfaP	b1154	b1155	Uncharacterized protein StfP; Phage or Prophage Related; To E.coli YfdL and M.jannaschii MJ0347	E14 prophage; putative tail fiber assembly protein TfaP; Uncharacterized protein YmfS; Phage or Prophage Related; To E.coli YfdK	0.985
stfP	yfdC	b1154	b2347	Uncharacterized protein StfP; Phage or Prophage Related; To E.coli YfdL and M.jannaschii MJ0347	Formate-nitrite transporter family protein; Inner membrane protein YfdC; Putative transport protein	0.579

page 1 of 4

Server load: low (14%) [HD]

Permalink

Network

Neighborhood

Textmining

Cooccurrence

Experiments

Coexpression

Databases

Fusion

© STRING Consortium 2022

Credits

Access

Info

About