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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ymfQE14 prophage; conserved protein YmfQ; To phage Mu protein gp48 and H.influenzae HI_1521 (194 aa)    
Predicted Functional Partners:
stfP
Uncharacterized protein StfP; Phage or Prophage Related; To E.coli YfdL and M.jannaschii MJ0347
 
  
 0.995
tfaP
E14 prophage; putative tail fiber assembly protein TfaP; Uncharacterized protein YmfS; Phage or Prophage Related; To E.coli YfdK
 
  
 0.987
yfdK
CPS-53 (KpLE1) prophage; putative tail fiber assembly protein YfdK; To E.coli YmfS
  
   
 0.922
tfaE
E14 prophage; putative tail fiber assembly protein TfaE; Prophage tail fiber assembly protein homolog TfaE; Phage or Prophage Related
 
  
 0.850
hyfJ
Putative processing element hydrogenase 4; Possible component of hydrogenase 4
      
 0.816
yfdC
Formate-nitrite transporter family protein; Inner membrane protein YfdC; Putative transport protein
      
 0.784
hyfR
Dna-binding transcriptional activator hyfr; A transcriptional activator of its own operon; when overexpressed operon expression is strongly enhanced by low pH (under pH 6.0), strongly inhibited by O(2) but only weakly stimulated by fumarate . Expression in situ is very weak
      
 0.705
yfgO
Putative upf0118 family inner membrane permease; Putative permease
      
 0.640
ymfE
E14 prophage; uncharacterized protein YmfE; Uncharacterized protein YmfE; Phage or Prophage Related
      
 0.609
croE
E14 prophage; putative DNA-binding transcriptional regulator YmfT; Prophage transcriptional regulatory protein; Phage or Prophage Related
   
  
 0.528
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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