STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
stfPUncharacterized protein StfP; Phage or Prophage Related; To E.coli YfdL and M.jannaschii MJ0347 (209 aa)    
Predicted Functional Partners:
ymfQ
E14 prophage; conserved protein YmfQ; To phage Mu protein gp48 and H.influenzae HI_1521
 
  
 0.995
tfaP
E14 prophage; putative tail fiber assembly protein TfaP; Uncharacterized protein YmfS; Phage or Prophage Related; To E.coli YfdK
 
  
 0.985
yfdK
CPS-53 (KpLE1) prophage; putative tail fiber assembly protein YfdK; To E.coli YmfS
  
   
 0.817
yaiP
Putative family 2 glycosyltransferase; Belongs to the glycosyltransferase 2 family
      
 0.781
djlC
Uncharacterized J domain-containing protein DjlC; Factor; Chaperones
  
     0.733
pinE
E14 prophage; site-specific DNA recombinase; This protein catalyzes the inversion of an 1800-bp E.coli DNA fragment, the P region, which can exist in either orientation. The function of the inversion is not yet clear
      
 0.733
tfaE
E14 prophage; putative tail fiber assembly protein TfaE; Prophage tail fiber assembly protein homolog TfaE; Phage or Prophage Related
 
  
 0.719
djlB
Uncharacterized J domain-containing protein DjlB; Putative enzyme of polynucleotide modification; Protein involved in protein folding
  
     0.706
intE
E14 prophage; putative integrase; Integrase from the cryptic lambdoic prophage e14. Integrase is necessary for integration of the phage into the host genome by site- specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome
   
  
 0.699
recE
Rac prophage; exonuclease viii, ds dna exonuclease, 5' --> 3' specific; Is involved in the RecE pathway of recombination. Catalyzes the degradation of double-stranded DNA. Acts progressively in a 5' to 3' direction, releasing 5'-phosphomononucleotides. Has a strong preference for linear duplex substrate DNA and appears to be unable to initiate degradation from single-stranded breaks in DNA
  
     0.691
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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