Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| djlB | recE | b0646 | b1350 | Uncharacterized J domain-containing protein DjlB; Putative enzyme of polynucleotide modification; Protein involved in protein folding | Rac prophage; exonuclease viii, ds dna exonuclease, 5' --> 3' specific; Is involved in the RecE pathway of recombination. Catalyzes the degradation of double-stranded DNA. Acts progressively in a 5' to 3' direction, releasing 5'-phosphomononucleotides. Has a strong preference for linear duplex substrate DNA and appears to be unable to initiate degradation from single-stranded breaks in DNA | 0.755 |
| djlB | stfP | b0646 | b1154 | Uncharacterized J domain-containing protein DjlB; Putative enzyme of polynucleotide modification; Protein involved in protein folding | Uncharacterized protein StfP; Phage or Prophage Related; To E.coli YfdL and M.jannaschii MJ0347 | 0.706 |
| djlC | recE | b0649 | b1350 | Uncharacterized J domain-containing protein DjlC; Factor; Chaperones | Rac prophage; exonuclease viii, ds dna exonuclease, 5' --> 3' specific; Is involved in the RecE pathway of recombination. Catalyzes the degradation of double-stranded DNA. Acts progressively in a 5' to 3' direction, releasing 5'-phosphomononucleotides. Has a strong preference for linear duplex substrate DNA and appears to be unable to initiate degradation from single-stranded breaks in DNA | 0.774 |
| djlC | stfP | b0649 | b1154 | Uncharacterized J domain-containing protein DjlC; Factor; Chaperones | Uncharacterized protein StfP; Phage or Prophage Related; To E.coli YfdL and M.jannaschii MJ0347 | 0.733 |
| intE | recE | b1140 | b1350 | E14 prophage; putative integrase; Integrase from the cryptic lambdoic prophage e14. Integrase is necessary for integration of the phage into the host genome by site- specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome | Rac prophage; exonuclease viii, ds dna exonuclease, 5' --> 3' specific; Is involved in the RecE pathway of recombination. Catalyzes the degradation of double-stranded DNA. Acts progressively in a 5' to 3' direction, releasing 5'-phosphomononucleotides. Has a strong preference for linear duplex substrate DNA and appears to be unable to initiate degradation from single-stranded breaks in DNA | 0.478 |
| intE | stfP | b1140 | b1154 | E14 prophage; putative integrase; Integrase from the cryptic lambdoic prophage e14. Integrase is necessary for integration of the phage into the host genome by site- specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome | Uncharacterized protein StfP; Phage or Prophage Related; To E.coli YfdL and M.jannaschii MJ0347 | 0.699 |
| intE | tfaE | b1140 | b1156 | E14 prophage; putative integrase; Integrase from the cryptic lambdoic prophage e14. Integrase is necessary for integration of the phage into the host genome by site- specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome | E14 prophage; putative tail fiber assembly protein TfaE; Prophage tail fiber assembly protein homolog TfaE; Phage or Prophage Related | 0.462 |
| intE | tfaP | b1140 | b1155 | E14 prophage; putative integrase; Integrase from the cryptic lambdoic prophage e14. Integrase is necessary for integration of the phage into the host genome by site- specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome | E14 prophage; putative tail fiber assembly protein TfaP; Uncharacterized protein YmfS; Phage or Prophage Related; To E.coli YfdK | 0.535 |
| pinE | stfP | b1158 | b1154 | E14 prophage; site-specific DNA recombinase; This protein catalyzes the inversion of an 1800-bp E.coli DNA fragment, the P region, which can exist in either orientation. The function of the inversion is not yet clear | Uncharacterized protein StfP; Phage or Prophage Related; To E.coli YfdL and M.jannaschii MJ0347 | 0.733 |
| pinE | tfaE | b1158 | b1156 | E14 prophage; site-specific DNA recombinase; This protein catalyzes the inversion of an 1800-bp E.coli DNA fragment, the P region, which can exist in either orientation. The function of the inversion is not yet clear | E14 prophage; putative tail fiber assembly protein TfaE; Prophage tail fiber assembly protein homolog TfaE; Phage or Prophage Related | 0.880 |
| pinE | tfaP | b1158 | b1155 | E14 prophage; site-specific DNA recombinase; This protein catalyzes the inversion of an 1800-bp E.coli DNA fragment, the P region, which can exist in either orientation. The function of the inversion is not yet clear | E14 prophage; putative tail fiber assembly protein TfaP; Uncharacterized protein YmfS; Phage or Prophage Related; To E.coli YfdK | 0.823 |
| recE | djlB | b1350 | b0646 | Rac prophage; exonuclease viii, ds dna exonuclease, 5' --> 3' specific; Is involved in the RecE pathway of recombination. Catalyzes the degradation of double-stranded DNA. Acts progressively in a 5' to 3' direction, releasing 5'-phosphomononucleotides. Has a strong preference for linear duplex substrate DNA and appears to be unable to initiate degradation from single-stranded breaks in DNA | Uncharacterized J domain-containing protein DjlB; Putative enzyme of polynucleotide modification; Protein involved in protein folding | 0.755 |
| recE | djlC | b1350 | b0649 | Rac prophage; exonuclease viii, ds dna exonuclease, 5' --> 3' specific; Is involved in the RecE pathway of recombination. Catalyzes the degradation of double-stranded DNA. Acts progressively in a 5' to 3' direction, releasing 5'-phosphomononucleotides. Has a strong preference for linear duplex substrate DNA and appears to be unable to initiate degradation from single-stranded breaks in DNA | Uncharacterized J domain-containing protein DjlC; Factor; Chaperones | 0.774 |
| recE | intE | b1350 | b1140 | Rac prophage; exonuclease viii, ds dna exonuclease, 5' --> 3' specific; Is involved in the RecE pathway of recombination. Catalyzes the degradation of double-stranded DNA. Acts progressively in a 5' to 3' direction, releasing 5'-phosphomononucleotides. Has a strong preference for linear duplex substrate DNA and appears to be unable to initiate degradation from single-stranded breaks in DNA | E14 prophage; putative integrase; Integrase from the cryptic lambdoic prophage e14. Integrase is necessary for integration of the phage into the host genome by site- specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome | 0.478 |
| recE | stfP | b1350 | b1154 | Rac prophage; exonuclease viii, ds dna exonuclease, 5' --> 3' specific; Is involved in the RecE pathway of recombination. Catalyzes the degradation of double-stranded DNA. Acts progressively in a 5' to 3' direction, releasing 5'-phosphomononucleotides. Has a strong preference for linear duplex substrate DNA and appears to be unable to initiate degradation from single-stranded breaks in DNA | Uncharacterized protein StfP; Phage or Prophage Related; To E.coli YfdL and M.jannaschii MJ0347 | 0.691 |
| recE | tfaP | b1350 | b1155 | Rac prophage; exonuclease viii, ds dna exonuclease, 5' --> 3' specific; Is involved in the RecE pathway of recombination. Catalyzes the degradation of double-stranded DNA. Acts progressively in a 5' to 3' direction, releasing 5'-phosphomononucleotides. Has a strong preference for linear duplex substrate DNA and appears to be unable to initiate degradation from single-stranded breaks in DNA | E14 prophage; putative tail fiber assembly protein TfaP; Uncharacterized protein YmfS; Phage or Prophage Related; To E.coli YfdK | 0.401 |
| stfP | djlB | b1154 | b0646 | Uncharacterized protein StfP; Phage or Prophage Related; To E.coli YfdL and M.jannaschii MJ0347 | Uncharacterized J domain-containing protein DjlB; Putative enzyme of polynucleotide modification; Protein involved in protein folding | 0.706 |
| stfP | djlC | b1154 | b0649 | Uncharacterized protein StfP; Phage or Prophage Related; To E.coli YfdL and M.jannaschii MJ0347 | Uncharacterized J domain-containing protein DjlC; Factor; Chaperones | 0.733 |
| stfP | intE | b1154 | b1140 | Uncharacterized protein StfP; Phage or Prophage Related; To E.coli YfdL and M.jannaschii MJ0347 | E14 prophage; putative integrase; Integrase from the cryptic lambdoic prophage e14. Integrase is necessary for integration of the phage into the host genome by site- specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome | 0.699 |
| stfP | pinE | b1154 | b1158 | Uncharacterized protein StfP; Phage or Prophage Related; To E.coli YfdL and M.jannaschii MJ0347 | E14 prophage; site-specific DNA recombinase; This protein catalyzes the inversion of an 1800-bp E.coli DNA fragment, the P region, which can exist in either orientation. The function of the inversion is not yet clear | 0.733 |
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