STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tfaPE14 prophage; uncharacterized protein; To E.coli YfdK. (137 aa)    
Predicted Functional Partners:
ymfQ
Uncharacterized protein YmfQ; Pseudogene, e14 prophage;Phage or Prophage Related; To phage Mu protein gp48 and H.influenzae HI_1521.
  
  
 0.982
stfP
E14 prophage; uncharacterized protein; To E.coli YfdL and M.jannaschii MJ0347.
  
  
 0.974
tfaE
E14 prophage; putative tail fiber assembly protein.
   
  
 0.951
croE
E14 prophage; putative DNA-binding transcriptional regulator.
   
  
 0.736
tfaQ
Qin prophage; Tail fiber assembly protein homolog from lambdoid prophage Qin; Belongs to the tfa family.
      
 0.736
ymfJ
E14 prophage; uncharacterized protein.
   
  
 0.692
ymfL
E14 prophage; putative DNA-binding transcriptional regulator.
   
    0.666
cohE
E14 prophage; repressor protein phage e14.
   
  
 0.650
ycfT
Inner membrane protein.
   
  
 0.643
ymfM
E14 prophage; uncharacterized protein.
   
    0.638
Your Current Organism:
Escherichia coli K12
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.