Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
fadH | ycgJ | b3081 | b1177 | 2,4-dienoyl-CoA reductase, NADH and FMN-linked; Functions as an auxiliary enzyme in the beta-oxidation of unsaturated fatty acids with double bonds at even carbon positions. Catalyzes the NADPH-dependent reduction of the C4-C5 double bond of the acyl chain of 2,4-dienoyl-CoA to yield 2-trans-enoyl-CoA. Acts on both isomers, 2-trans,4- cis- and 2-trans,4-trans-decadienoyl-CoA, with almost equal efficiency. Is not active with NADH instead of NADPH. Does not show cis->trans isomerase activity. | Uncharacterized protein. | 0.452 |
pliG | ycgJ | b1178 | b1177 | Periplasmic inhibitor of g-type lysozyme; Inhibits activity of g-type lysozyme, which confers increased lysozyme tolerance to the bacterium. | Uncharacterized protein. | 0.704 |
pliG | yncE | b1178 | b1452 | Periplasmic inhibitor of g-type lysozyme; Inhibits activity of g-type lysozyme, which confers increased lysozyme tolerance to the bacterium. | ATP-binding protein, periplasmic, function unknown; Putative receptor. | 0.612 |
tusE | yccX | b0969 | b0968 | mnm(5)-s(2)U34-tRNA 2-thiolation sulfurtransferase; Part of a sulfur-relay system required for 2-thiolation of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Could accept sulfur from TusD. | Weak acylphosphatase. | 0.507 |
tusE | ycgJ | b0969 | b1177 | mnm(5)-s(2)U34-tRNA 2-thiolation sulfurtransferase; Part of a sulfur-relay system required for 2-thiolation of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Could accept sulfur from TusD. | Uncharacterized protein. | 0.505 |
yccX | tusE | b0968 | b0969 | Weak acylphosphatase. | mnm(5)-s(2)U34-tRNA 2-thiolation sulfurtransferase; Part of a sulfur-relay system required for 2-thiolation of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Could accept sulfur from TusD. | 0.507 |
yccX | ycgJ | b0968 | b1177 | Weak acylphosphatase. | Uncharacterized protein. | 0.641 |
yccX | ygjH | b0968 | b3074 | Weak acylphosphatase. | Putative tRNA synthetase; Protein involved in tRNA aminoacylation for protein translation. | 0.423 |
ycgJ | fadH | b1177 | b3081 | Uncharacterized protein. | 2,4-dienoyl-CoA reductase, NADH and FMN-linked; Functions as an auxiliary enzyme in the beta-oxidation of unsaturated fatty acids with double bonds at even carbon positions. Catalyzes the NADPH-dependent reduction of the C4-C5 double bond of the acyl chain of 2,4-dienoyl-CoA to yield 2-trans-enoyl-CoA. Acts on both isomers, 2-trans,4- cis- and 2-trans,4-trans-decadienoyl-CoA, with almost equal efficiency. Is not active with NADH instead of NADPH. Does not show cis->trans isomerase activity. | 0.452 |
ycgJ | pliG | b1177 | b1178 | Uncharacterized protein. | Periplasmic inhibitor of g-type lysozyme; Inhibits activity of g-type lysozyme, which confers increased lysozyme tolerance to the bacterium. | 0.704 |
ycgJ | tusE | b1177 | b0969 | Uncharacterized protein. | mnm(5)-s(2)U34-tRNA 2-thiolation sulfurtransferase; Part of a sulfur-relay system required for 2-thiolation of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Could accept sulfur from TusD. | 0.505 |
ycgJ | yccX | b1177 | b0968 | Uncharacterized protein. | Weak acylphosphatase. | 0.641 |
ycgJ | ygjH | b1177 | b3074 | Uncharacterized protein. | Putative tRNA synthetase; Protein involved in tRNA aminoacylation for protein translation. | 0.733 |
ycgJ | yncD | b1177 | b1451 | Uncharacterized protein. | Putative iron outer membrane transporter; Probable receptor, TonB-dependent. | 0.528 |
ycgJ | yncE | b1177 | b1452 | Uncharacterized protein. | ATP-binding protein, periplasmic, function unknown; Putative receptor. | 0.480 |
ycgJ | ynfA | b1177 | b1582 | Uncharacterized protein. | UPF0060 family inner membrane protein. | 0.650 |
ycgJ | ynfB | b1177 | b1583 | Uncharacterized protein. | UPF0482 family putative periplasmic protein. | 0.646 |
ygjH | yccX | b3074 | b0968 | Putative tRNA synthetase; Protein involved in tRNA aminoacylation for protein translation. | Weak acylphosphatase. | 0.423 |
ygjH | ycgJ | b3074 | b1177 | Putative tRNA synthetase; Protein involved in tRNA aminoacylation for protein translation. | Uncharacterized protein. | 0.733 |
yncD | ycgJ | b1451 | b1177 | Putative iron outer membrane transporter; Probable receptor, TonB-dependent. | Uncharacterized protein. | 0.528 |
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