STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycgVPutative adhesion and penetration protein. (955 aa)    
Predicted Functional Partners:
yihM
Putative sugar phosphate isomerase.
  
     0.752
nfrA
Bacteriophage N4 receptor, outer membrane subunit; (Microbial infection) Allows N4 phage attachment by binding to the viral non-contractile sheath protein.
  
    0.751
dhaR
dhaKLM operon transcription activator; Positively regulates the dhaKLM operon from a sigma-70 promoter. Represses its own expression.
      
 0.623
yhfK
Putative transporter, FUSC superfamily inner membrane protein; Protein involved in metabolic process.
  
     0.616
yhcD
Putative outer membrane fimbrial subunit usher protein; Involved in the export and assembly of a fimbrial subunit across the outer membrane; Belongs to the fimbrial export usher family.
  
    0.570
flu
Novel sRNA, CP4-44; Controls colony form variation and autoaggregation. May function as an adhesin.
      
 0.569
yihN
MFS transporter family protein; Putative resistance protein (transport); Belongs to the major facilitator superfamily.
  
     0.563
yebB
DUF830 family protein; To E.coli YiiX.
  
    0.530
dhaK
Dihydroxyacetone kinase, PTS-dependent, dihydroxyacetone-binding subunit; Dihydroxyacetone binding subunit of the dihydroxyacetone kinase, which is responsible for the phosphoenolpyruvate (PEP)- dependent phosphorylation of dihydroxyacetone via a phosphoryl group transfer from DhaL-ATP. Binds covalently dihydroxyacetone in hemiaminal linkage. DhaK acts also as corepressor of the transcription activator DhaR by binding to the sensor domain of DhaR. In the presence of dihydroxyacetone, DhaL-ADP displaces DhaK and stimulates DhaR activity. In the absence of dihydroxyacetone, DhaL- ADP is [...]
      
 0.517
nfrB
Bacteriophage N4 receptor, inner membrane subunit; Required for bacteriophage N4 adsorption. May be a component of the phage receptor.
  
     0.483
Your Current Organism:
Escherichia coli K12
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.