STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yciNDUF2498 protein YciN. (83 aa)    
Predicted Functional Partners:
smg
DUF494 family putative periplasmic protein; Belongs to the Smg family.
   
  
 0.601
yfdN
Uncharacterized protein YfdN; CPS-53 (KpLE1) prophage; putative methyltransferase;Phage or Prophage Related.
      
 0.600
ydcY
DUF2526 family protein.
   
  
 0.575
yfeD
DUF1323 family putative DNA-binding protein.
   
  
 0.571
yafV
Omega-amidase YafV; Hydrolyzes alpha-ketoglutaramate (a-KGM) to alpha- ketoglutarate (alpha-KG) and ammonia, has weak activity on L-glutamine, almost no activity on deaminated glutathione (dGSH) and none on glutathione (By similarity). May function as a metabolite repair enzyme (By similarity); Belongs to the carbon-nitrogen hydrolase superfamily. NIT1/NIT2 family.
      
 0.569
yoaB
Putative reactive intermediate deaminase; Belongs to the RutC family.
   
  
 0.542
ppdB
Putative prepilin peptidase-dependent protein; Not yet known.
      
 0.536
ylcG
Uncharacterized protein, DLP12 prophage.
      
 0.530
ycbJ
Protein kinase-like domain protein.
      
 0.529
ydcJ
Putative metalloenzyme; To M.tuberculosis Rv3292.
      
 0.529
Your Current Organism:
Escherichia coli K12
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
Server load: medium (64%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.