STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydaURac prophage; duf1376 domain-containing protein ydau; Uncharacterized protein YdaU; Phage or Prophage Related (285 aa)    
Predicted Functional Partners:
ydaS
Rac prophage; toxin ydas; Uncharacterized protein YdaS; Phage or Prophage Related
 
   
 0.955
ydaT
Rac prophage; protein ydat; Uncharacterized protein YdaT; Phage or Prophage Related
  
  
 0.932
ydaV
Rac prophage; putative atp-binding protein ydav; Uncharacterized protein YdaV; Putative DNA replication factor
 
  
 0.914
yneG
annotation not available
      
 0.814
racR
Rac prophage; dna-binding transcriptional repressor racr; Repressor protein for rac prophage
     
 0.806
yqiA
Uncharacterized protein; Displays esterase activity toward palmitoyl-CoA and pNP- butyrate
      
 0.790
stfR
Rac prophage; putative membrane protein; Prophage side tail fiber protein homolog StfR; Phage or Prophage Related; Belongs to the tail fiber family
  
   
 0.762
recE
Rac prophage; exonuclease viii, ds dna exonuclease, 5' --> 3' specific; Is involved in the RecE pathway of recombination. Catalyzes the degradation of double-stranded DNA. Acts progressively in a 5' to 3' direction, releasing 5'-phosphomononucleotides. Has a strong preference for linear duplex substrate DNA and appears to be unable to initiate degradation from single-stranded breaks in DNA
  
   
 0.745
sieB
Phage superinfection exclusion protein, rac prophage; Phage superinfection exclusion protein
      
 0.735
ygeH
Transcriptional regulator hila, main transcriptional regulator of spi1; Uncharacterized protein YgeH; Putative invasion protein
  
     0.697
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.