STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydaURac prophage; conserved protein. (285 aa)    
Predicted Functional Partners:
ydaT
Rac prophage; uncharacterized protein.
  
  
 0.923
ydaV
Rac prophage; Putative DNA replication factor.
  
  
 0.893
ydaS
Rac prophage; putative DNA-binding transcriptional regulator.
  
  
 0.879
racR
Rac prophage; Repressor protein for rac prophage.
     
 0.741
yqiA
Acyl CoA esterase; Displays esterase activity toward palmitoyl-CoA and pNP- butyrate.
      
 0.690
yneG
DUF4186 family protein.
      
 0.624
hyaF
Hydrogenase-1 protein nickel incorporation factor; Not known. Could enhance the incorporation of nickel to the hydrogenase.
      
 0.521
yjbM
Uncharacterized protein.
      
 0.521
yhaM
Putative L-serine dehydratase alpha chain; Plays a role in L-cysteine detoxification; it has been speculated to be a cysteine desulfhydrase.
      
 0.503
afuC
CP4-6 prophage; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.
   
  
 0.458
Your Current Organism:
Escherichia coli K12
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.