STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydaVRac prophage; Putative DNA replication factor. (248 aa)    
Predicted Functional Partners:
ydaU
Rac prophage; conserved protein.
  
  
 0.893
ydaT
Rac prophage; uncharacterized protein.
  
  
 0.854
stfR
Rac prophage; putative tail fiber protein; Belongs to the tail fiber family.
      
 0.808
ydaF
Uncharacterized protein, Rac prophage; To E.coli YdfA.
     
 0.715
ydaS
Rac prophage; putative DNA-binding transcriptional regulator.
  
  
 0.704
yfbL
Putative aminopeptidase.
      
 0.621
yecA
UPF0149 family protein.
  
     0.609
yehP
VMA domain putative YehL ATPase stimulator.
   
  
 0.563
intE
E14 prophage; Integrase from the cryptic lambdoic prophage e14. Integrase is necessary for integration of the phage into the host genome by site- specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome.
 
  
 0.550
ymfR
Uncharacterized protein YmfR; Pseudogene, phage terminase protein A family, e14 prophage;Phage or Prophage Related.
   
  
 0.541
Your Current Organism:
Escherichia coli K12
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.