Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
rhsD | ynaK | b0497 | b1365 | Rhs protein with DUF4329 family putative toxin domain; Rhs elements have a nonessential function. They may play an important role in the natural ecology of the cell. | Rac prophage; conserved protein. | 0.410 |
rsmG | ynaK | b3740 | b1365 | 16S rRNA m(7)G527 methyltransferase, SAM-dependent; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA. Requires the intact 30S subunit for methylation; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family. | Rac prophage; conserved protein. | 0.606 |
trkG | ynaK | b1363 | b1365 | Rac prophage; Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA. Requires TrkE (sapD) for maximal transport activity, low activity is seen in its absence; no further stimulation is seen with SapF. Transport in the absence of SapD is dependent on a high membrane potential and a high cytoplasmic ATP concentration, suggesting this protein may be able to interact with other ATP-binding proteins. Can transport potassium and rubidium. | Rac prophage; conserved protein. | 0.503 |
tynA | ydbD | b1386 | b1407 | Tyramine oxidase, copper-requiring; The enzyme prefers aromatic over aliphatic amines; Belongs to the copper/topaquinone oxidase family. | PF10971 family putative periplasmic methylglyoxal resistance protein; To E.coli YkiA. | 0.692 |
tynA | ynaK | b1386 | b1365 | Tyramine oxidase, copper-requiring; The enzyme prefers aromatic over aliphatic amines; Belongs to the copper/topaquinone oxidase family. | Rac prophage; conserved protein. | 0.540 |
ybdN | ynaK | b0602 | b1365 | PAPS reductase-like domain protein. | Rac prophage; conserved protein. | 0.482 |
ydbD | tynA | b1407 | b1386 | PF10971 family putative periplasmic methylglyoxal resistance protein; To E.coli YkiA. | Tyramine oxidase, copper-requiring; The enzyme prefers aromatic over aliphatic amines; Belongs to the copper/topaquinone oxidase family. | 0.692 |
ydbD | ynaK | b1407 | b1365 | PF10971 family putative periplasmic methylglyoxal resistance protein; To E.coli YkiA. | Rac prophage; conserved protein. | 0.685 |
ynaK | rhsD | b1365 | b0497 | Rac prophage; conserved protein. | Rhs protein with DUF4329 family putative toxin domain; Rhs elements have a nonessential function. They may play an important role in the natural ecology of the cell. | 0.410 |
ynaK | rsmG | b1365 | b3740 | Rac prophage; conserved protein. | 16S rRNA m(7)G527 methyltransferase, SAM-dependent; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA. Requires the intact 30S subunit for methylation; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family. | 0.606 |
ynaK | trkG | b1365 | b1363 | Rac prophage; conserved protein. | Rac prophage; Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA. Requires TrkE (sapD) for maximal transport activity, low activity is seen in its absence; no further stimulation is seen with SapF. Transport in the absence of SapD is dependent on a high membrane potential and a high cytoplasmic ATP concentration, suggesting this protein may be able to interact with other ATP-binding proteins. Can transport potassium and rubidium. | 0.503 |
ynaK | tynA | b1365 | b1386 | Rac prophage; conserved protein. | Tyramine oxidase, copper-requiring; The enzyme prefers aromatic over aliphatic amines; Belongs to the copper/topaquinone oxidase family. | 0.540 |
ynaK | ybdN | b1365 | b0602 | Rac prophage; conserved protein. | PAPS reductase-like domain protein. | 0.482 |
ynaK | ydbD | b1365 | b1407 | Rac prophage; conserved protein. | PF10971 family putative periplasmic methylglyoxal resistance protein; To E.coli YkiA. | 0.685 |