STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pinRPutative dna-invertase from lambdoid prophage rac; Serine recombinase PinR; Phage or Prophage Related (196 aa)    
Predicted Functional Partners:
ynaE
Uncharacterized protein YnaE; Phage or Prophage Related
  
  
 0.955
tfaR
Rac prophage; putative tail fiber assembly protein tfar; Belongs to the tfa family
   
  
 0.897
ydfK
Cold shock protein YdfK; Cryptic prophage Qin/Kim
   
  
 0.874
ybfD
H repeat-associated putative transposase ybfd; Belongs to the transposase 11 family
   
 
 0.845
tfaQ
Qin prophage; putative tail fiber assembly protein tfaq; Belongs to the tfa family
      
 0.826
rzoD
DLP12 prophage; putative prophage lysis lipoprotein RzoD; Component of the spanin complex that disrupts the outer membrane and causes cell lysis during virus exit. The spanin complex conducts the final step in cell lysis by disrupting the outer membrane after holin and endolysin action have permeabilized the inner membrane and degraded the host peptidoglycans (By similarity)
      
 0.824
rzoR
Rac prophage; putative lipoprotein; Component of the spanin complex that disrupts the outer membrane and causes cell lysis during virus exit. The spanin complex conducts the final step in cell lysis by disrupting the outer membrane after holin and endolysin action have permeabilized the inner membrane and degraded the host peptidoglycans (By similarity)
      
 0.821
yhhI
Putative transposase; Belongs to the transposase 11 family
    
 
 0.751
pinQ
Serine recombinase PinQ; Phage or Prophage Related; Belongs to the site-specific recombinase resolvase family
  
 
0.749
ldrC
annotation not available
      
 0.740
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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