STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydbDPF10971 family putative periplasmic methylglyoxal resistance protein; To E.coli YkiA (768 aa)    
Predicted Functional Partners:
ynbB
Uncharacterized protein YnbB; Putative phosphatidate cytidiltransferase; Protein involved in nucleobase, nucleoside and nucleotide interconversion
     
 0.842
ybfK
annotation not available
      
 0.739
yahL
annotation not available
      
 0.735
yfjI
CP4-57 prophage; protein YfjI; Uncharacterized protein YfjI; Phage or Prophage Related
      
 0.704
ydbC
Putative nad(p)-binding oxidoreductase; Catalyzes the NAD(P)H-dependent reduction of pyridoxal to pyridoxine in vitro. Is not able to reduce 4-pyridoxate, and to oxidize pyridoxine or pyridoxamine . Has Kemp eliminase activity towards the non-physiological substrate 5-nitrobenzisoxazole, producing 4-nitro-2-cyanophenol; this activity is not considered to be physiologically relevant
       0.645
yagM
CP4-6 prophage; protein YagM; Uncharacterized protein YagM; Phage or Prophage Related
      
 0.602
gtrS
CPS-53 (KpLE1) prophage; serotype specific glucosyl transferase; Uncharacterized protein YfdI; Putative ligase
      
 0.574
ynbA
Inner membrane protein YnbA; Putative enzyme; Not classified
  
    0.520
wcaE
Putative colanic acid biosynthesis glycosyl transferase; Protein involved in colanic acid biosynthetic process
      
 0.508
ynbC
annotation not available
       0.470
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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