STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ynbAInner membrane protein YnbA; Putative enzyme; Not classified (201 aa)    
Predicted Functional Partners:
ynbC
annotation not available
    0.995
ynbD
Putative phosphatase inner membrane protein; Belongs to the protein-tyrosine phosphatase family
  
 0.988
ynbB
Uncharacterized protein YnbB; Putative phosphatidate cytidiltransferase; Protein involved in nucleobase, nucleoside and nucleotide interconversion
 
  
 0.979
ynjF
Cdp-alcohol phosphatidyltransferase family inner membrane protein; Inner membrane protein YnjF; Putative cytochrome oxidase
      
 0.877
ynjI
annotation not available
      
 0.872
ygiZ
annotation not available
   
  
 0.828
yqhG
annotation not available
      
 0.820
yidL
Uncharacterized HTH-type transcriptional regulator YidL; Putative ARAC-type regulatory protein; Protein involved in transcription activator activity and transcription
  
   
 0.819
yecT
Uncharacterized protein; To R.meliloti R02472
      
 0.790
rhsB
Rhs protein with duf4329 family putative toxin domain; Rhs elements have a nonessential function. They may play an important role in the natural ecology of the cell
   
  
 0.734
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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