STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ynbDPutative phosphatase inner membrane protein; Belongs to the protein-tyrosine phosphatase family (430 aa)    
Predicted Functional Partners:
ynbC
annotation not available
  
 0.997
ynbA
Inner membrane protein YnbA; Putative enzyme; Not classified
  
 0.988
ynbB
Uncharacterized protein YnbB; Putative phosphatidate cytidiltransferase; Protein involved in nucleobase, nucleoside and nucleotide interconversion
 
   
 0.968
b1402
Pseudogene, autotransporter homolog; interrupted by IS2 and IS30
   
 
 0.795
b1996
CP4-44 prophage; putative disrupted hemin or colicin receptor;Phage or Prophage Related; interrupted by IS2 and C-terminal deletion
   
 
 0.795
b2860
Pseudogene, orgA family, part of T3SS PAI ETT2 remnant
   
 
 0.795
yedJ
annotation not available
      
 0.790
yedP
annotation not available
      
 0.786
insD1
IS2 transposase TnpB; IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related
   
 
 0.749
b3045
IS2 transposase TnpB; IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related
   
 
 0.749
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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