STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydcAannotation not available (57 aa)    
Predicted Functional Partners:
ydhB
Belongs to the LysR transcriptional regulatory family.
      
 0.878
yjiM
Belongs to the FldB/FldC dehydratase alpha/beta subunit family
      
 0.871
yjbT
Belongs to the YjbT family
      
 0.870
ydgC
annotation not available
      
 0.850
yciZ
annotation not available
      
 0.826
ydcD
Uncharacterized protein YdcD; Pseudogene, Rhs family
      
 0.790
ymgI
annotation not available
      
 0.788
yjiN
annotation not available
      
 0.736
yjiC
To E.coli YjfZ
      
 0.735
ydcY
annotation not available
      
 0.733
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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