STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydcRFused putative dna-binding transcriptional regulator/putative aminotransferase ydcr; In the C-terminal section; belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family (468 aa)    
Predicted Functional Partners:
hicB
Antitoxin of the hica-hicb toxin-antitoxin system; Antitoxin component of a type II toxin-antitoxin (TA) system. Functions as an mRNA interferase antitoxin; overexpression prevents HicA-mediated cessation of cell growth and inhibition of cell proliferation
     
 0.671
ybiU
annotation not available
      
 0.620
yijF
annotation not available
 
   
 0.589
ydbL
annotation not available
      
 0.588
yfdC
Formate-nitrite transporter family protein; Inner membrane protein YfdC; Putative transport protein
      
 0.562
ybeR
DUF1266 domain-containing protein YbeR; To E.coli YbeU
      
 0.560
dapB
4-hydroxy-tetrahydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate. Can use both NADH and NADPH as a reductant, with NADH being twice as effective as NADPH
 
 
   0.530
ybgQ
Putative fimbrial usher protein ybgq; Could be involved in the export and assembly of the putative YbgD fimbrial subunit across the outer membrane
      
 0.520
yegI
Protein kinase-related putative non-specific dna-binding protein; Probable serine/threonine kinase
      
 0.520
yehP
annotation not available
      
 0.518
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.