STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydcCBelongs to the transposase 11 family (378 aa)    
Predicted Functional Partners:
ydiF
CoA transferase having broad substrate specificity for short- chain acyl-CoA thioesters with the activity decreasing when the length of the carboxylic acid chain exceeds four carbons. May play a role in short-chain fatty acid metabolism in E.coli (By similarity).
      
 0.678
insL1
IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related
 
     0.649
b0582
IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related
 
     0.649
b2394
annotation not available
 
     0.649
rhsB
Rhs elements have a nonessential function. They may play an important role in the natural ecology of the cell
  
     0.642
rhsA
Rhs elements have a nonessential function. They may play an important role in the natural ecology of the cell
  
     0.640
rhsC
Rhs elements have a nonessential function. They may play an important role in the natural ecology of the cell
  
     0.636
rhsD
Rhs elements have a nonessential function. They may play an important role in the natural ecology of the cell
  
     0.614
yidK
Uncharacterized symporter YidK; Putative cotransporter
      
 0.613
ypjA
Uncharacterized outer membrane protein YpjA; Putative ATP-binding component of a transport system
  
     0.600
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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