Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| glpC | narG | b2243 | b1224 | Anaerobic sn-glycerol-3-phosphate dehydrogenase, c subunit, 4fe-4s iron-sulfur cluster; Electron transfer protein; may also function as the membrane anchor for the GlpAB dimer | Nitrate reductase / nitrite oxidoreductase, alpha subunit; The nitrate reductase enzyme complex allows E.coli to use nitrate as an electron acceptor during anaerobic growth. The alpha chain is the actual site of nitrate reduction | 0.906 |
| glpC | narH | b2243 | b1225 | Anaerobic sn-glycerol-3-phosphate dehydrogenase, c subunit, 4fe-4s iron-sulfur cluster; Electron transfer protein; may also function as the membrane anchor for the GlpAB dimer | Nitrate reductase / nitrite oxidoreductase, beta subunit; The nitrate reductase enzyme complex allows E.coli to use nitrate as an electron acceptor during anaerobic growth. The beta chain is an electron transfer unit containing four cysteine clusters involved in the formation of iron-sulfur centers. Electrons are transferred from the gamma chain to the molybdenum cofactor of the alpha subunit | 0.900 |
| glpC | narV | b2243 | b1465 | Anaerobic sn-glycerol-3-phosphate dehydrogenase, c subunit, 4fe-4s iron-sulfur cluster; Electron transfer protein; may also function as the membrane anchor for the GlpAB dimer | Nitrate reductase 2 (nrz), gamma subunit; This is a second nitrate reductase enzyme which can substitute for the NRA enzyme and allows E.coli to use nitrate as an electron acceptor during anaerobic growth. The gamma chain is a membrane-embedded heme-iron unit resembling cytochrome b, which transfers electrons from quinones to the beta subunit | 0.909 |
| glpC | narY | b2243 | b1467 | Anaerobic sn-glycerol-3-phosphate dehydrogenase, c subunit, 4fe-4s iron-sulfur cluster; Electron transfer protein; may also function as the membrane anchor for the GlpAB dimer | Nitrate reductase / nitrite oxidoreductase, beta subunit; This is a second nitrate reductase enzyme which can substitute for the NRA enzyme and allows E.coli to use nitrate as an electron acceptor during anaerobic growth. The beta chain is an electron transfer unit containing four cysteine clusters involved in the formation of iron-sulfur centers. Electrons are transferred from the gamma chain to the molybdenum cofactor of the alpha subunit | 0.900 |
| glpC | narZ | b2243 | b1468 | Anaerobic sn-glycerol-3-phosphate dehydrogenase, c subunit, 4fe-4s iron-sulfur cluster; Electron transfer protein; may also function as the membrane anchor for the GlpAB dimer | Nitrate reductase / nitrite oxidoreductase, alpha subunit; This is a second nitrate reductase enzyme which can substitute for the NRA enzyme and allows E.coli to use nitrate as an electron acceptor during anaerobic growth | 0.907 |
| narG | glpC | b1224 | b2243 | Nitrate reductase / nitrite oxidoreductase, alpha subunit; The nitrate reductase enzyme complex allows E.coli to use nitrate as an electron acceptor during anaerobic growth. The alpha chain is the actual site of nitrate reduction | Anaerobic sn-glycerol-3-phosphate dehydrogenase, c subunit, 4fe-4s iron-sulfur cluster; Electron transfer protein; may also function as the membrane anchor for the GlpAB dimer | 0.906 |
| narG | narH | b1224 | b1225 | Nitrate reductase / nitrite oxidoreductase, alpha subunit; The nitrate reductase enzyme complex allows E.coli to use nitrate as an electron acceptor during anaerobic growth. The alpha chain is the actual site of nitrate reduction | Nitrate reductase / nitrite oxidoreductase, beta subunit; The nitrate reductase enzyme complex allows E.coli to use nitrate as an electron acceptor during anaerobic growth. The beta chain is an electron transfer unit containing four cysteine clusters involved in the formation of iron-sulfur centers. Electrons are transferred from the gamma chain to the molybdenum cofactor of the alpha subunit | 0.999 |
| narG | narJ | b1224 | b1226 | Nitrate reductase / nitrite oxidoreductase, alpha subunit; The nitrate reductase enzyme complex allows E.coli to use nitrate as an electron acceptor during anaerobic growth. The alpha chain is the actual site of nitrate reduction | Molybdenum-cofactor-assembly chaperone delta subunit of nitrate reductase 1; Chaperone required for proper molybdenum cofactor insertion and final assembly of the membrane-bound respiratory nitrate reductase 1. Required for the insertion of the molybdenum into the apo-NarG subunit, maybe by keeping NarG in an appropriate competent-open conformation for the molybdenum cofactor insertion to occur. NarJ maintains the apoNarGH complex in a soluble state. Upon insertion of the molybdenum cofactor, NarJ seems to dissociate from the activated soluble NarGH complex, before its association with [...] | 0.999 |
| narG | narK | b1224 | b1223 | Nitrate reductase / nitrite oxidoreductase, alpha subunit; The nitrate reductase enzyme complex allows E.coli to use nitrate as an electron acceptor during anaerobic growth. The alpha chain is the actual site of nitrate reduction | Mfs transporter, nnp family, nitrate/nitrite transporter; Catalyzes nitrate uptake, nitrite uptake and nitrite export across the cytoplasmic membrane. Functions as a nitrate/nitrite exchanger, and protons are probably not co-transported with the substrate | 0.998 |
| narG | narU | b1224 | b1469 | Nitrate reductase / nitrite oxidoreductase, alpha subunit; The nitrate reductase enzyme complex allows E.coli to use nitrate as an electron acceptor during anaerobic growth. The alpha chain is the actual site of nitrate reduction | Mfs transporter, nnp family, nitrate/nitrite transporter; Catalyzes nitrate uptake, nitrite uptake and nitrite export across the cytoplasmic membrane. May function as a nitrate/H(+) and nitrite/H(+) channel. Could confer a selective advantage during severe nutrient starvation or slow growth | 0.964 |
| narG | narV | b1224 | b1465 | Nitrate reductase / nitrite oxidoreductase, alpha subunit; The nitrate reductase enzyme complex allows E.coli to use nitrate as an electron acceptor during anaerobic growth. The alpha chain is the actual site of nitrate reduction | Nitrate reductase 2 (nrz), gamma subunit; This is a second nitrate reductase enzyme which can substitute for the NRA enzyme and allows E.coli to use nitrate as an electron acceptor during anaerobic growth. The gamma chain is a membrane-embedded heme-iron unit resembling cytochrome b, which transfers electrons from quinones to the beta subunit | 0.993 |
| narG | narW | b1224 | b1466 | Nitrate reductase / nitrite oxidoreductase, alpha subunit; The nitrate reductase enzyme complex allows E.coli to use nitrate as an electron acceptor during anaerobic growth. The alpha chain is the actual site of nitrate reduction | Narw, putative private chaperone for narz nitrate reductase subunit; Chaperone required for proper molybdenum cofactor insertion and final assembly of the membrane-bound respiratory nitrate reductase 2 | 0.996 |
| narG | narY | b1224 | b1467 | Nitrate reductase / nitrite oxidoreductase, alpha subunit; The nitrate reductase enzyme complex allows E.coli to use nitrate as an electron acceptor during anaerobic growth. The alpha chain is the actual site of nitrate reduction | Nitrate reductase / nitrite oxidoreductase, beta subunit; This is a second nitrate reductase enzyme which can substitute for the NRA enzyme and allows E.coli to use nitrate as an electron acceptor during anaerobic growth. The beta chain is an electron transfer unit containing four cysteine clusters involved in the formation of iron-sulfur centers. Electrons are transferred from the gamma chain to the molybdenum cofactor of the alpha subunit | 0.999 |
| narG | narZ | b1224 | b1468 | Nitrate reductase / nitrite oxidoreductase, alpha subunit; The nitrate reductase enzyme complex allows E.coli to use nitrate as an electron acceptor during anaerobic growth. The alpha chain is the actual site of nitrate reduction | Nitrate reductase / nitrite oxidoreductase, alpha subunit; This is a second nitrate reductase enzyme which can substitute for the NRA enzyme and allows E.coli to use nitrate as an electron acceptor during anaerobic growth | 0.916 |
| narG | nuoB | b1224 | b2287 | Nitrate reductase / nitrite oxidoreductase, alpha subunit; The nitrate reductase enzyme complex allows E.coli to use nitrate as an electron acceptor during anaerobic growth. The alpha chain is the actual site of nitrate reduction | Nadh:ubiquinone oxidoreductase, chain b; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient | 0.903 |
| narH | glpC | b1225 | b2243 | Nitrate reductase / nitrite oxidoreductase, beta subunit; The nitrate reductase enzyme complex allows E.coli to use nitrate as an electron acceptor during anaerobic growth. The beta chain is an electron transfer unit containing four cysteine clusters involved in the formation of iron-sulfur centers. Electrons are transferred from the gamma chain to the molybdenum cofactor of the alpha subunit | Anaerobic sn-glycerol-3-phosphate dehydrogenase, c subunit, 4fe-4s iron-sulfur cluster; Electron transfer protein; may also function as the membrane anchor for the GlpAB dimer | 0.900 |
| narH | narG | b1225 | b1224 | Nitrate reductase / nitrite oxidoreductase, beta subunit; The nitrate reductase enzyme complex allows E.coli to use nitrate as an electron acceptor during anaerobic growth. The beta chain is an electron transfer unit containing four cysteine clusters involved in the formation of iron-sulfur centers. Electrons are transferred from the gamma chain to the molybdenum cofactor of the alpha subunit | Nitrate reductase / nitrite oxidoreductase, alpha subunit; The nitrate reductase enzyme complex allows E.coli to use nitrate as an electron acceptor during anaerobic growth. The alpha chain is the actual site of nitrate reduction | 0.999 |
| narH | narJ | b1225 | b1226 | Nitrate reductase / nitrite oxidoreductase, beta subunit; The nitrate reductase enzyme complex allows E.coli to use nitrate as an electron acceptor during anaerobic growth. The beta chain is an electron transfer unit containing four cysteine clusters involved in the formation of iron-sulfur centers. Electrons are transferred from the gamma chain to the molybdenum cofactor of the alpha subunit | Molybdenum-cofactor-assembly chaperone delta subunit of nitrate reductase 1; Chaperone required for proper molybdenum cofactor insertion and final assembly of the membrane-bound respiratory nitrate reductase 1. Required for the insertion of the molybdenum into the apo-NarG subunit, maybe by keeping NarG in an appropriate competent-open conformation for the molybdenum cofactor insertion to occur. NarJ maintains the apoNarGH complex in a soluble state. Upon insertion of the molybdenum cofactor, NarJ seems to dissociate from the activated soluble NarGH complex, before its association with [...] | 0.999 |
| narH | narK | b1225 | b1223 | Nitrate reductase / nitrite oxidoreductase, beta subunit; The nitrate reductase enzyme complex allows E.coli to use nitrate as an electron acceptor during anaerobic growth. The beta chain is an electron transfer unit containing four cysteine clusters involved in the formation of iron-sulfur centers. Electrons are transferred from the gamma chain to the molybdenum cofactor of the alpha subunit | Mfs transporter, nnp family, nitrate/nitrite transporter; Catalyzes nitrate uptake, nitrite uptake and nitrite export across the cytoplasmic membrane. Functions as a nitrate/nitrite exchanger, and protons are probably not co-transported with the substrate | 0.990 |
| narH | narU | b1225 | b1469 | Nitrate reductase / nitrite oxidoreductase, beta subunit; The nitrate reductase enzyme complex allows E.coli to use nitrate as an electron acceptor during anaerobic growth. The beta chain is an electron transfer unit containing four cysteine clusters involved in the formation of iron-sulfur centers. Electrons are transferred from the gamma chain to the molybdenum cofactor of the alpha subunit | Mfs transporter, nnp family, nitrate/nitrite transporter; Catalyzes nitrate uptake, nitrite uptake and nitrite export across the cytoplasmic membrane. May function as a nitrate/H(+) and nitrite/H(+) channel. Could confer a selective advantage during severe nutrient starvation or slow growth | 0.965 |
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