STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ddpCPutative d,d-dipeptide abc transporter membrane subunit ddpc; Part of the ABC transporter complex DdpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for the translocation of the substrate across the membrane (298 aa)    
Predicted Functional Partners:
ddpF
Putative d,d-dipeptide abc transporter atp-binding subunit ddpf; Part of the ABC transporter complex DdpABCDF, which is probably involved in D,D-dipeptide transport . Probably responsible for energy coupling to the transport system
 
 0.995
ddpD
Putative d,d-dipeptide abc transporter atp-binding subunit ddpd; Part of the ABC transporter complex DdpABCDF, which is probably involved in D,D-dipeptide transport . Probably responsible for energy coupling to the transport system
 0.995
ddpB
Putative d,d-dipeptide abc transporter membrane subunit ddpb; Part of the ABC transporter complex DdpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for the translocation of the substrate across the membrane
 0.994
ddpA
Putative d,d-dipeptide abc transporter periplasmic binding protein; Part of the ABC transporter complex DdpABCDF, which is probably involved in D,D-dipeptide transport
 
 0.993
ygiS
Peptide/nickel transport system substrate-binding protein; Probably part of a deoxycholate transport system. Its expression in the presence of deoxycholate in a ygiS deletion mutant increases intracellular deoxycholate levels and decreases cell growth; higher expression in the presence of deoxycholate inhibits cell growth completely. Bile acid detergents such as deoxycholate are important for host defense against bacterial growth in the gall bladder and duodenum
 
 0.911
yiaB
annotation not available
      
 0.900
ydhX
Putative 4fe-4s ferredoxin-type protein; Uncharacterized ferredoxin-like protein YdhX; Putative oxidoreductase, Fe-S subunit
      
 0.880
yigG
annotation not available
      
 0.878
ddpX
D-ala-d-ala dipeptidase, zn-dependent; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide. May have a role in cell-wall turnover
 
     0.863
gsiC
Glutathione abc transporter membrane subunit gsic; Part of the ABC transporter complex GsiABCD involved in glutathione import. Probably responsible for the translocation of the substrate across the membrane
 
 
 0.829
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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