STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydeSPutative fimbrial-like protein (176 aa)    
Predicted Functional Partners:
ydeR
Putative fimbrial-like protein
 
    0.977
ydeQ
Uncharacterized fimbrial-like protein YdeQ; Putative adhesin; similar to FimH protein
 
    0.930
yraH
Uncharacterized fimbrial-like protein YraH; Part of the yraHIJK fimbrial operon. Could contribute to adhesion to various surfaces in specific environmental niches. Increases adhesion to eukaryotic T24 bladder epithelial cells in the absence of fim operon
  
   
 0.874
ygiL
Putative fimbrial-like protein
  
   
 0.860
yehC
Probable fimbrial chaperone YehC; Part of the yehABCD fimbrial operon. Could contribute to adhesion to various surfaces in specific environmental niches
  
   
 0.853
ybgD
Putative fimbrial-like protein; Belongs to the fimbrial protein family
  
   
 0.818
fimD
Outer membrane usher protein FimD; Involved in the export and assembly of FimA fimbrial subunits across the outer membrane
  
     0.772
fimC
Chaperone protein FimC; Required for the biogenesis of type 1 fimbriae. Binds and interact with FimH
  
     0.770
yfcV
Uncharacterized fimbrial-like protein YfcV; Part of the yfcOPQRSUV fimbrial operon. Could contribute to adhesion to various surfaces in specific environmental niches. Increases adhesion to eukaryotic T24 bladder epithelial cells in the absence of fim genes
  
   
 0.757
adeQ
Adenine permease AdeQ; High-affinity transporter for adenine
      
 0.754
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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