Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ecpE | fimC | b0289 | b4316 | Mat/ecp fimbriae periplasmic chaperone; Part of the ecpRABCDE operon, which encodes the E.coli common pilus (ECP). ECP is found in both commensal and pathogenic strains and plays a dual role in early-stage biofilm development and host cell recognition (By similarity) | Type 1 fimbriae periplasmic chaperone; Required for the biogenesis of type 1 fimbriae. Binds and interact with FimH | 0.535 |
| ecpE | fimH | b0289 | b4320 | Mat/ecp fimbriae periplasmic chaperone; Part of the ecpRABCDE operon, which encodes the E.coli common pilus (ECP). ECP is found in both commensal and pathogenic strains and plays a dual role in early-stage biofilm development and host cell recognition (By similarity) | Involved in regulation of length and mediation of adhesion of type 1 fimbriae (but not necessary for the production of fimbriae). Adhesin responsible for the binding to D-mannose. It is laterally positioned at intervals in the structure of the type 1 fimbriae. In order to integrate FimH in the fimbriae FimF and FimG are needed | 0.722 |
| ecpE | ydeQ | b0289 | b1502 | Mat/ecp fimbriae periplasmic chaperone; Part of the ecpRABCDE operon, which encodes the E.coli common pilus (ECP). ECP is found in both commensal and pathogenic strains and plays a dual role in early-stage biofilm development and host cell recognition (By similarity) | Uncharacterized fimbrial-like protein YdeQ; Putative adhesin; similar to FimH protein | 0.868 |
| ecpE | ydeR | b0289 | b1503 | Mat/ecp fimbriae periplasmic chaperone; Part of the ecpRABCDE operon, which encodes the E.coli common pilus (ECP). ECP is found in both commensal and pathogenic strains and plays a dual role in early-stage biofilm development and host cell recognition (By similarity) | Putative fimbrial-like adhesin protein; Putative fimbrial-like protein | 0.703 |
| ecpE | ydeS | b0289 | b1504 | Mat/ecp fimbriae periplasmic chaperone; Part of the ecpRABCDE operon, which encodes the E.coli common pilus (ECP). ECP is found in both commensal and pathogenic strains and plays a dual role in early-stage biofilm development and host cell recognition (By similarity) | Putative fimbrial-like adhesin protein; Putative fimbrial-like protein | 0.916 |
| ecpE | yehB | b0289 | b2109 | Mat/ecp fimbriae periplasmic chaperone; Part of the ecpRABCDE operon, which encodes the E.coli common pilus (ECP). ECP is found in both commensal and pathogenic strains and plays a dual role in early-stage biofilm development and host cell recognition (By similarity) | Putative fimbrial usher protein yehb; Part of the yehABCD fimbrial operon. Could contribute to adhesion to various surfaces in specific environmental niches. Probably involved in the export and assembly of fimbrial subunits across the outer membrane | 0.731 |
| ecpE | yehC | b0289 | b2110 | Mat/ecp fimbriae periplasmic chaperone; Part of the ecpRABCDE operon, which encodes the E.coli common pilus (ECP). ECP is found in both commensal and pathogenic strains and plays a dual role in early-stage biofilm development and host cell recognition (By similarity) | Putative periplasmic pilin chaperone; Part of the yehABCD fimbrial operon. Could contribute to adhesion to various surfaces in specific environmental niches | 0.734 |
| ecpE | yehD | b0289 | b2111 | Mat/ecp fimbriae periplasmic chaperone; Part of the ecpRABCDE operon, which encodes the E.coli common pilus (ECP). ECP is found in both commensal and pathogenic strains and plays a dual role in early-stage biofilm development and host cell recognition (By similarity) | Putative fimbrial-like adhesin protein; Part of the yehABCD fimbrial operon. Could contribute to adhesion to various surfaces in specific environmental niches | 0.515 |
| elfD | fimD | b0939 | b4317 | Putative periplasmic pilin chaperone; Part of the elfADCG-ycbUVF fimbrial operon, which promotes adhesion of bacteria to different abiotic surfaces. Could be required for the biogenesis of the ElfA fimbriae | Fimbrial usher outer membrane porin protein; Involved in the export and assembly of FimA fimbrial subunits across the outer membrane | 0.772 |
| elfD | ydeR | b0939 | b1503 | Putative periplasmic pilin chaperone; Part of the elfADCG-ycbUVF fimbrial operon, which promotes adhesion of bacteria to different abiotic surfaces. Could be required for the biogenesis of the ElfA fimbriae | Putative fimbrial-like adhesin protein; Putative fimbrial-like protein | 0.894 |
| elfD | ydeS | b0939 | b1504 | Putative periplasmic pilin chaperone; Part of the elfADCG-ycbUVF fimbrial operon, which promotes adhesion of bacteria to different abiotic surfaces. Could be required for the biogenesis of the ElfA fimbriae | Putative fimbrial-like adhesin protein; Putative fimbrial-like protein | 0.966 |
| elfD | yehB | b0939 | b2109 | Putative periplasmic pilin chaperone; Part of the elfADCG-ycbUVF fimbrial operon, which promotes adhesion of bacteria to different abiotic surfaces. Could be required for the biogenesis of the ElfA fimbriae | Putative fimbrial usher protein yehb; Part of the yehABCD fimbrial operon. Could contribute to adhesion to various surfaces in specific environmental niches. Probably involved in the export and assembly of fimbrial subunits across the outer membrane | 0.674 |
| elfD | yehD | b0939 | b2111 | Putative periplasmic pilin chaperone; Part of the elfADCG-ycbUVF fimbrial operon, which promotes adhesion of bacteria to different abiotic surfaces. Could be required for the biogenesis of the ElfA fimbriae | Putative fimbrial-like adhesin protein; Part of the yehABCD fimbrial operon. Could contribute to adhesion to various surfaces in specific environmental niches | 0.730 |
| fimC | ecpE | b4316 | b0289 | Type 1 fimbriae periplasmic chaperone; Required for the biogenesis of type 1 fimbriae. Binds and interact with FimH | Mat/ecp fimbriae periplasmic chaperone; Part of the ecpRABCDE operon, which encodes the E.coli common pilus (ECP). ECP is found in both commensal and pathogenic strains and plays a dual role in early-stage biofilm development and host cell recognition (By similarity) | 0.535 |
| fimC | fimD | b4316 | b4317 | Type 1 fimbriae periplasmic chaperone; Required for the biogenesis of type 1 fimbriae. Binds and interact with FimH | Fimbrial usher outer membrane porin protein; Involved in the export and assembly of FimA fimbrial subunits across the outer membrane | 0.999 |
| fimC | fimH | b4316 | b4320 | Type 1 fimbriae periplasmic chaperone; Required for the biogenesis of type 1 fimbriae. Binds and interact with FimH | Involved in regulation of length and mediation of adhesion of type 1 fimbriae (but not necessary for the production of fimbriae). Adhesin responsible for the binding to D-mannose. It is laterally positioned at intervals in the structure of the type 1 fimbriae. In order to integrate FimH in the fimbriae FimF and FimG are needed | 0.999 |
| fimC | ydeQ | b4316 | b1502 | Type 1 fimbriae periplasmic chaperone; Required for the biogenesis of type 1 fimbriae. Binds and interact with FimH | Uncharacterized fimbrial-like protein YdeQ; Putative adhesin; similar to FimH protein | 0.663 |
| fimC | ydeR | b4316 | b1503 | Type 1 fimbriae periplasmic chaperone; Required for the biogenesis of type 1 fimbriae. Binds and interact with FimH | Putative fimbrial-like adhesin protein; Putative fimbrial-like protein | 0.654 |
| fimC | ydeS | b4316 | b1504 | Type 1 fimbriae periplasmic chaperone; Required for the biogenesis of type 1 fimbriae. Binds and interact with FimH | Putative fimbrial-like adhesin protein; Putative fimbrial-like protein | 0.770 |
| fimC | yehB | b4316 | b2109 | Type 1 fimbriae periplasmic chaperone; Required for the biogenesis of type 1 fimbriae. Binds and interact with FimH | Putative fimbrial usher protein yehb; Part of the yehABCD fimbrial operon. Could contribute to adhesion to various surfaces in specific environmental niches. Probably involved in the export and assembly of fimbrial subunits across the outer membrane | 0.734 |
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