STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydeIannotation not available (130 aa)    
Predicted Functional Partners:
yciF
Protein YciF; Putative structural proteins
  
  
 0.776
yodD
annotation not available
   
  
 0.765
yqeH
To E.coli YkgK
  
     0.689
ydeJ
Does not have nicotinamide-nucleotide (NMN) amidohydrolase activity
 
  
 0.668
yqeI
To V.cholerae cholera toxin transcriptional activator (ToxR)
  
     0.614
elfA
Part of the elfADCG-ycbUVF fimbrial operon, which promotes adhesion of bacteria to different abiotic surfaces. ElfA is the major fimbrial subunit produced by this operon.
  
   
 0.612
yoaG
annotation not available
  
   
 0.609
ybgS
Uncharacterized protein YbgS; Putative homeobox protein
  
    0.606
yeeJ
Belongs to the intimin/invasin family
  
     0.595
mdtM
Confers resistance to acriflavine, chloramphenicol, norfloxacin, ethidium bromide and TPP
  
     0.590
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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