STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
stfQProphage side tail fiber protein homolog StfQ; Phage or Prophage Related; Belongs to the tail fiber family (320 aa)    
Predicted Functional Partners:
tfaQ
Qin prophage; putative tail fiber assembly protein tfaq; Belongs to the tfa family
 
  
 0.987
tfaR
Rac prophage; putative tail fiber assembly protein tfar; Belongs to the tfa family
 
    0.783
ypjA
Adhesin-like autotransporter ypja; Uncharacterized outer membrane protein YpjA; Putative ATP-binding component of a transport system
  
    0.763
tfaE
E14 prophage; putative tail fiber assembly protein TfaE; Prophage tail fiber assembly protein homolog TfaE; Phage or Prophage Related
 
    0.760
ykfA
CP4-6 prophage; putative GTP-binding protein YkfA; To E.coli YfjP and YeeP
      
 0.739
yagN
CP4-6 prophage; protein YagN; Uncharacterized protein YagN; Phage or Prophage Related
      
 0.738
yagG
Putative d-xylonate transporter yagg; Putative glycoside/cation symporter YagG; Putative permease
   
  
 0.733
clcB
Putative chloride:h(+) antiporter clcb; Probably acts as an electrical shunt for an outwardly- directed proton pump that is linked to amino acid decarboxylation, as part of the extreme acid resistance (XAR) response
      
 0.733
waaS
Lipopolysaccharide rhamnose:kdoiii transferase; Lipopolysaccharide core biosynthesis; Protein involved in cell surface antigen activity, host-interacting and lipopolysaccharide core region biosynthetic process
  
   
 0.718
ygeH
Transcriptional regulator hila, main transcriptional regulator of spi1; Uncharacterized protein YgeH; Putative invasion protein
  
    0.711
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.