STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydfRUncharacterized protein YdfR; Phage or Prophage Related (103 aa)    
Predicted Functional Partners:
yfdT
Uncharacterized protein YfdT; Phage or Prophage Related
      
 0.893
yfdR
Uncharacterized protein YfdR; Phage or Prophage Related
      
 0.878
yfdS
Uncharacterized protein YfdS; Phage or Prophage Related; To the N-terminal region of phage HK97/HK620 Gp37/hpaH
      
 0.878
essQ
Prophage lysis protein S homolog EssQ; Phage or Prophage Related; Belongs to the lambda phage S protein family
  
    0.853
rrrQ
Essential for lysis of bacterial cell wall, by showing cell wall hydrolyzing activity
       0.845
diaA
Required for the timely initiation of chromosomal replication via direct interactions with the DnaA initiator protein.
      
 0.706
yfdP
To phage T4 y06Q
      
 0.609
yfdQ
Uncharacterized protein YfdQ; Phage or Prophage Related
      
 0.601
yfbR
Essential component of the deoxycytidine triphosphate (dCTP) pathway for de novo synthesis of thymidylate. Catalyzes the strictly specific dephosphorylation of 2'-deoxyribonucleoside 5'-monophosphates (dAMP, dGMP, dTMP, dUMP, dIMP and dCMP) and does not dephosphorylate 5'-ribonucleotides or ribonucleoside 3'-monophosphates.
      
 0.482
rzoQ
Putative lipoprotein RzoQ; Completely contained in another CDS
       0.476
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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