STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dicAQin prophage; This protein is a repressor of division inhibition gene dicB. (135 aa)    
Predicted Functional Partners:
dicC
Repressor protein of division inhibition gene dicB; This protein is a repressor of division inhibition gene dicB.
     
 0.953
dicB
Qin prophage; Involved in cell division inhibition; this function can be repressed by DicA and DicC proteins as well as antitoxin CbeA (yeeU).
      
 0.899
racR
Rac prophage; Repressor protein for rac prophage.
   
  
 0.852
ydfA
Qin prophage; uncharacterized protein; To E.coli YdaF.
  
  
 0.850
cohE
E14 prophage; repressor protein phage e14.
   
  
 0.654
ygjK
Alpha-glucosidase; Glucoside hydrolase that cleaves the alpha-1,3-glucosidic linkage in nigerose. Has very low activity towards maltooligosaccharides, soluble starch, nigerotriose, kojibiose and trehalose.
  
     0.557
ynfN
Qin prophage; cold shock-induced protein.
      
 0.544
ydaT
Rac prophage; uncharacterized protein.
      
 0.508
ydfB
Qin prophage; uncharacterized protein.
  
  
 0.493
ydfD
Qin prophage; uncharacterized protein.
      
 0.475
Your Current Organism:
Escherichia coli K12
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.