STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ynfAannotation not available (108 aa)    
Predicted Functional Partners:
yiaB
annotation not available
      
 0.826
ynfB
annotation not available
     
 0.783
ddpC
Putative d,d-dipeptide abc transporter membrane subunit ddpc; Part of the ABC transporter complex DdpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for the translocation of the substrate across the membrane
      
 0.781
yigG
annotation not available
      
 0.781
ycaM
Inner membrane transporter YcaM; Putative transport; Not classified
      
 0.732
ycgJ
annotation not available
      
 0.731
ydgC
annotation not available
      
 0.731
yieK
Putative glucosamine-6-phosphate deaminase yiek; Belongs to the glucosamine/galactosamine-6-phosphate isomerase family
      
 0.654
yfjD
UPF0053 inner membrane protein YfjD; Putative membrane protein
 
   
 0.648
yoaB
Putative reactive intermediate deaminase; RutC family protein YoaB; Putative enzyme; Not classified; Belongs to the RutC family
      
 0.630
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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