STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ynfBUPF0482 family putative periplasmic protein. (113 aa)    
Predicted Functional Partners:
speG
Spermidine N(1)-acetyltransferase; Involved in the protection against polyamine toxicity by regulating their concentration. Catalyzes the transfer of an acetyl group from acetyl coenzyme A (AcCoA) to the primary amino groups of spermidine to yield N(1)- and N(8)-acetylspermidine. It can also use polyamines such as spermine, but not putrescine.
 
  
 0.999
ynfA
UPF0060 family inner membrane protein.
  
  
 0.813
ycgJ
Uncharacterized protein.
   
  
 0.646
yedD
Lipoprotein.
      
 0.644
yjjU
Putative patatin-like family phospholipase; Probable lipid hydrolase.
      
 0.526
yjbR
DUF419 family protein.
      
 0.510
yiiS
UPF0381 family protein; Belongs to the UPF0381 family.
   
  
 0.489
yjbQ
Thiamine phosphate synthase; Belongs to the UPF0047 family.
   
  
 0.488
yiaF
Barrier effect co-colonization resistance factor; DUF3053 family lipoprotein.
      
 0.419
yccT
UPF0319 family protein; Belongs to the UPF0319 family.
      
 0.409
Your Current Organism:
Escherichia coli K12
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.