STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ynfDannotation not available (101 aa)    
Predicted Functional Partners:
ybaN
Inner membrane protein YbaN; Orf; Not classified
      
 0.730
ynfE
Tat-targeted selenate reductase subunit ynfe; Terminal reductase during anaerobic growth on various sulfoxide and N-oxide compounds
     
 0.712
yigF
annotation not available
      
 0.705
ynfB
annotation not available
 
     0.661
yccU
annotation not available
   
  
 0.655
yccJ
annotation not available
  
  
 0.637
yddA
Vitamin b12/bleomycin/antimicrobial peptide transport system atp-binding/permease protein; Inner membrane ABC transporter ATP-binding protein YddA; Putative transport; Not classified
  
   
 0.623
ynfC
annotation not available
  
    0.612
yihD
Uncharacterized protein; To H.influenzae HI_0845
      
 0.605
ydiE
Hemin uptake protein hemp homolog; To Y.enterocolitica HemP
      
 0.604
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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