STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ynfMInner membrane transport protein YnfM; Putative transport protein (417 aa)    
Predicted Functional Partners:
ynfL
Belongs to the LysR transcriptional regulatory family.
 
   0.785
yfcJ
Overexpression has no effect on intracellular arabinose concentrations
      
 0.674
yajR
Inner membrane transport protein YajR; Putative transport protein; Protein involved in response to drug
      
 0.636
yhgN
annotation not available
      
 0.626
yhhS
Confers high-level resistance to glyphosate when overexpressed . Overexpression has no effect on intracellular arabinose concentrations .
    
 
 0.623
ydeA
Involved in the efflux of sugars. The physiological role may be the reduction of the intracellular concentration of toxic sugars or sugar metabolites. Transports L-arabinose and to a lesser extent IPTG. Seems to contribute to the control of the arabinose regulon
      
 0.605
ygcS
Inner membrane metabolite transport protein YgcS; Putative transport protein
    
 
 0.587
ydeE
A transporter able to export peptides. When overexpressed, allows cells deleted for multiple peptidases (pepA, pepB, pepD and pepN) to grow in the presence of dipeptides Ala-Gln or Gly-Tyr which otherwise inhibit growth . Cells overexpressing this protein have decreased intracellular levels of Ala-Gln dipeptide, and in a system that produces the Ala-Gln dipeptide overproduction of this protein increases export of the dipeptide .
      
 0.579
ydgK
annotation not available
      
 0.570
ydeJ
Does not have nicotinamide-nucleotide (NMN) amidohydrolase activity
      
 0.567
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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