STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydgCGlpM family inner membrane protein. (111 aa)    
Predicted Functional Partners:
yjbT
Putative periplasmic protein; Belongs to the YjbT family.
      
 0.805
yjiM
Putative 2-hydroxyglutaryl-CoA dehydratase; Belongs to the FldB/FldC dehydratase alpha/beta subunit family.
      
 0.803
yciZ
Uncharacterized protein.
      
 0.782
ymgI
Uncharacterized protein.
      
 0.681
ydcA
Putative periplasmic protein.
   
  
 0.648
yjiN
Zinc-type alcohol dehydrogenase-like protein.
      
 0.624
ydcD
Uncharacterized protein YdcD; Pseudogene, Rhs family.
      
 0.623
ydcY
DUF2526 family protein.
      
 0.622
yjiC
Uncharacterized protein; To E.coli YjfZ.
      
 0.544
rstA
Response regulator of RstAB two-component system; Member of the two-component regulatory system RstB/RstA.
  
    0.538
Your Current Organism:
Escherichia coli K12
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.