Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
rstA | ydgC | b1608 | b1607 | Response regulator of RstAB two-component system; Member of the two-component regulatory system RstB/RstA. | GlpM family inner membrane protein. | 0.538 |
yciZ | ydcA | b4596 | b1419 | Uncharacterized protein. | Putative periplasmic protein. | 0.782 |
yciZ | ydcD | b4596 | b1457 | Uncharacterized protein. | Uncharacterized protein YdcD; Pseudogene, Rhs family. | 0.732 |
yciZ | ydcY | b4596 | b1446 | Uncharacterized protein. | DUF2526 family protein. | 0.731 |
yciZ | ydgC | b4596 | b1607 | Uncharacterized protein. | GlpM family inner membrane protein. | 0.782 |
yciZ | yjbT | b4596 | b4620 | Uncharacterized protein. | Putative periplasmic protein; Belongs to the YjbT family. | 0.811 |
yciZ | yjiC | b4596 | b4325 | Uncharacterized protein. | Uncharacterized protein; To E.coli YjfZ. | 0.644 |
yciZ | yjiM | b4596 | b4335 | Uncharacterized protein. | Putative 2-hydroxyglutaryl-CoA dehydratase; Belongs to the FldB/FldC dehydratase alpha/beta subunit family. | 0.811 |
yciZ | yjiN | b4596 | b4336 | Uncharacterized protein. | Zinc-type alcohol dehydrogenase-like protein. | 0.737 |
yciZ | ymgI | b4596 | b4593 | Uncharacterized protein. | Uncharacterized protein. | 0.786 |
ydcA | yciZ | b1419 | b4596 | Putative periplasmic protein. | Uncharacterized protein. | 0.782 |
ydcA | ydcD | b1419 | b1457 | Putative periplasmic protein. | Uncharacterized protein YdcD; Pseudogene, Rhs family. | 0.623 |
ydcA | ydcY | b1419 | b1446 | Putative periplasmic protein. | DUF2526 family protein. | 0.622 |
ydcA | ydgC | b1419 | b1607 | Putative periplasmic protein. | GlpM family inner membrane protein. | 0.648 |
ydcA | yjbT | b1419 | b4620 | Putative periplasmic protein. | Putative periplasmic protein; Belongs to the YjbT family. | 0.805 |
ydcA | yjiC | b1419 | b4325 | Putative periplasmic protein. | Uncharacterized protein; To E.coli YjfZ. | 0.550 |
ydcA | yjiM | b1419 | b4335 | Putative periplasmic protein. | Putative 2-hydroxyglutaryl-CoA dehydratase; Belongs to the FldB/FldC dehydratase alpha/beta subunit family. | 0.803 |
ydcA | yjiN | b1419 | b4336 | Putative periplasmic protein. | Zinc-type alcohol dehydrogenase-like protein. | 0.626 |
ydcA | ymgI | b1419 | b4593 | Putative periplasmic protein. | Uncharacterized protein. | 0.689 |
ydcD | yciZ | b1457 | b4596 | Uncharacterized protein YdcD; Pseudogene, Rhs family. | Uncharacterized protein. | 0.732 |
page 1 of 5