Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| cnu | rsxA | b1625 | b1627 | Nucleoid-associated oric-binding protein; Modifies the set of genes regulated by H-NS; Hha and Cnu (YdgT) increase the number of genes bound by H-NS/StpA and may also modulate the oligomerization of the H-NS/StpA-complex on DNA . The complex formed with H-NS binds to the specific 26-bp cnb site in the origin of replication oriC . Can complement, at least partially, the absence of the Hha protein in hha mutants | Na+-translocating ferredoxin:nad+ oxidoreductase subunit a; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane (By similarity). Required to maintain the reduced state of SoxR. Probably transfers electron from NAD(P)H to SoxR | 0.470 |
| cnu | rsxB | b1625 | b1628 | Nucleoid-associated oric-binding protein; Modifies the set of genes regulated by H-NS; Hha and Cnu (YdgT) increase the number of genes bound by H-NS/StpA and may also modulate the oligomerization of the H-NS/StpA-complex on DNA . The complex formed with H-NS binds to the specific 26-bp cnb site in the origin of replication oriC . Can complement, at least partially, the absence of the Hha protein in hha mutants | Na+-translocating ferredoxin:nad+ oxidoreductase subunit b; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane (By similarity). Required to maintain the reduced state of SoxR. Probably transfers electron from NAD(P)H to SoxR | 0.493 |
| cnu | ydgK | b1625 | b1626 | Nucleoid-associated oric-binding protein; Modifies the set of genes regulated by H-NS; Hha and Cnu (YdgT) increase the number of genes bound by H-NS/StpA and may also modulate the oligomerization of the H-NS/StpA-complex on DNA . The complex formed with H-NS binds to the specific 26-bp cnb site in the origin of replication oriC . Can complement, at least partially, the absence of the Hha protein in hha mutants | annotation not available | 0.764 |
| cnu | yhcO | b1625 | b3239 | Nucleoid-associated oric-binding protein; Modifies the set of genes regulated by H-NS; Hha and Cnu (YdgT) increase the number of genes bound by H-NS/StpA and may also modulate the oligomerization of the H-NS/StpA-complex on DNA . The complex formed with H-NS binds to the specific 26-bp cnb site in the origin of replication oriC . Can complement, at least partially, the absence of the Hha protein in hha mutants | Putative barnase inhibitor; Belongs to the barstar family | 0.433 |
| csiE | ybjP | b2535 | b0865 | annotation not available | DUF3828 domain-containing lipoprotein YbjP; Uncharacterized lipoprotein YbjP; Putative lipoprotein | 0.764 |
| csiE | ydgK | b2535 | b1626 | annotation not available | annotation not available | 0.750 |
| csiE | yebV | b2535 | b1836 | annotation not available | annotation not available | 0.675 |
| csiE | yhcO | b2535 | b3239 | annotation not available | Putative barnase inhibitor; Belongs to the barstar family | 0.701 |
| preA | rsxA | b2147 | b1627 | Dihydropyrimidine dehydrogenase, nadh-dependent, subunit c; Involved in pyrimidine base degradation. Catalyzes physiologically the reduction of uracil to 5,6-dihydrouracil (DHU) by using NADH as a specific cosubstrate. It also catalyzes the reverse reaction and the reduction of thymine to 5,6-dihydrothymine (DHT) | Na+-translocating ferredoxin:nad+ oxidoreductase subunit a; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane (By similarity). Required to maintain the reduced state of SoxR. Probably transfers electron from NAD(P)H to SoxR | 0.411 |
| preA | rsxB | b2147 | b1628 | Dihydropyrimidine dehydrogenase, nadh-dependent, subunit c; Involved in pyrimidine base degradation. Catalyzes physiologically the reduction of uracil to 5,6-dihydrouracil (DHU) by using NADH as a specific cosubstrate. It also catalyzes the reverse reaction and the reduction of thymine to 5,6-dihydrothymine (DHT) | Na+-translocating ferredoxin:nad+ oxidoreductase subunit b; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane (By similarity). Required to maintain the reduced state of SoxR. Probably transfers electron from NAD(P)H to SoxR | 0.464 |
| preA | ydgK | b2147 | b1626 | Dihydropyrimidine dehydrogenase, nadh-dependent, subunit c; Involved in pyrimidine base degradation. Catalyzes physiologically the reduction of uracil to 5,6-dihydrouracil (DHU) by using NADH as a specific cosubstrate. It also catalyzes the reverse reaction and the reduction of thymine to 5,6-dihydrothymine (DHT) | annotation not available | 0.740 |
| preA | yedR | b2147 | b1963 | Dihydropyrimidine dehydrogenase, nadh-dependent, subunit c; Involved in pyrimidine base degradation. Catalyzes physiologically the reduction of uracil to 5,6-dihydrouracil (DHU) by using NADH as a specific cosubstrate. It also catalyzes the reverse reaction and the reduction of thymine to 5,6-dihydrothymine (DHT) | annotation not available | 0.731 |
| preA | yjfP | b2147 | b4190 | Dihydropyrimidine dehydrogenase, nadh-dependent, subunit c; Involved in pyrimidine base degradation. Catalyzes physiologically the reduction of uracil to 5,6-dihydrouracil (DHU) by using NADH as a specific cosubstrate. It also catalyzes the reverse reaction and the reduction of thymine to 5,6-dihydrothymine (DHT) | Uncharacterized protein; Displays esterase activity toward palmitoyl-CoA and pNP- butyrate | 0.636 |
| rsxA | cnu | b1627 | b1625 | Na+-translocating ferredoxin:nad+ oxidoreductase subunit a; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane (By similarity). Required to maintain the reduced state of SoxR. Probably transfers electron from NAD(P)H to SoxR | Nucleoid-associated oric-binding protein; Modifies the set of genes regulated by H-NS; Hha and Cnu (YdgT) increase the number of genes bound by H-NS/StpA and may also modulate the oligomerization of the H-NS/StpA-complex on DNA . The complex formed with H-NS binds to the specific 26-bp cnb site in the origin of replication oriC . Can complement, at least partially, the absence of the Hha protein in hha mutants | 0.470 |
| rsxA | preA | b1627 | b2147 | Na+-translocating ferredoxin:nad+ oxidoreductase subunit a; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane (By similarity). Required to maintain the reduced state of SoxR. Probably transfers electron from NAD(P)H to SoxR | Dihydropyrimidine dehydrogenase, nadh-dependent, subunit c; Involved in pyrimidine base degradation. Catalyzes physiologically the reduction of uracil to 5,6-dihydrouracil (DHU) by using NADH as a specific cosubstrate. It also catalyzes the reverse reaction and the reduction of thymine to 5,6-dihydrothymine (DHT) | 0.411 |
| rsxA | rsxB | b1627 | b1628 | Na+-translocating ferredoxin:nad+ oxidoreductase subunit a; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane (By similarity). Required to maintain the reduced state of SoxR. Probably transfers electron from NAD(P)H to SoxR | Na+-translocating ferredoxin:nad+ oxidoreductase subunit b; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane (By similarity). Required to maintain the reduced state of SoxR. Probably transfers electron from NAD(P)H to SoxR | 0.999 |
| rsxA | ydgK | b1627 | b1626 | Na+-translocating ferredoxin:nad+ oxidoreductase subunit a; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane (By similarity). Required to maintain the reduced state of SoxR. Probably transfers electron from NAD(P)H to SoxR | annotation not available | 0.803 |
| rsxB | cnu | b1628 | b1625 | Na+-translocating ferredoxin:nad+ oxidoreductase subunit b; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane (By similarity). Required to maintain the reduced state of SoxR. Probably transfers electron from NAD(P)H to SoxR | Nucleoid-associated oric-binding protein; Modifies the set of genes regulated by H-NS; Hha and Cnu (YdgT) increase the number of genes bound by H-NS/StpA and may also modulate the oligomerization of the H-NS/StpA-complex on DNA . The complex formed with H-NS binds to the specific 26-bp cnb site in the origin of replication oriC . Can complement, at least partially, the absence of the Hha protein in hha mutants | 0.493 |
| rsxB | preA | b1628 | b2147 | Na+-translocating ferredoxin:nad+ oxidoreductase subunit b; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane (By similarity). Required to maintain the reduced state of SoxR. Probably transfers electron from NAD(P)H to SoxR | Dihydropyrimidine dehydrogenase, nadh-dependent, subunit c; Involved in pyrimidine base degradation. Catalyzes physiologically the reduction of uracil to 5,6-dihydrouracil (DHU) by using NADH as a specific cosubstrate. It also catalyzes the reverse reaction and the reduction of thymine to 5,6-dihydrothymine (DHT) | 0.464 |
| rsxB | rsxA | b1628 | b1627 | Na+-translocating ferredoxin:nad+ oxidoreductase subunit b; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane (By similarity). Required to maintain the reduced state of SoxR. Probably transfers electron from NAD(P)H to SoxR | Na+-translocating ferredoxin:nad+ oxidoreductase subunit a; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane (By similarity). Required to maintain the reduced state of SoxR. Probably transfers electron from NAD(P)H to SoxR | 0.999 |
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