STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rsxBNa+-translocating ferredoxin:nad+ oxidoreductase subunit b; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane (By similarity). Required to maintain the reduced state of SoxR. Probably transfers electron from NAD(P)H to SoxR (192 aa)    
Predicted Functional Partners:
rsxA
Na+-translocating ferredoxin:nad+ oxidoreductase subunit a; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane (By similarity). Required to maintain the reduced state of SoxR. Probably transfers electron from NAD(P)H to SoxR
  
 0.999
rsxC
Na+-translocating ferredoxin:nad+ oxidoreductase subunit c; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane (By similarity). Required to maintain the reduced state of SoxR. Probably transfers electron from NAD(P)H to SoxR
  
 0.999
rsxD
Na+-translocating ferredoxin:nad+ oxidoreductase subunit d; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane (By similarity). Required to maintain the reduced state of SoxR. Probably transfers electron from NAD(P)H to SoxR
 
  
 0.999
rsxG
Na+-translocating ferredoxin:nad+ oxidoreductase subunit g; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane (By similarity). Required to maintain the reduced state of SoxR. Probably transfers electron from NAD(P)H to SoxR
  
 0.999
rsxE
Na+-translocating ferredoxin:nad+ oxidoreductase subunit e; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane (By similarity). Required to maintain the reduced state of SoxR. Probably transfers electron from NAD(P)H to SoxR
 
  
 0.998
nth
Dna glycosylase and apyrimidinic (ap) lyase (endonuclease iii); DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate
  
  
 0.929
ratB
Putative component of the rsx system; Does not function as an antitoxin to the upstream RatA toxin
 
   
 0.748
yfjK
CP4-57 prophage; putative helicase YfjK; Uncharacterized protein YfjK; Phage or Prophage Related
      
 0.740
wcaK
Putative colanic acid biosynthesis pyruvyl transferase; Putative galactokinase; Protein involved in colanic acid biosynthetic process
      
 0.731
gsiB
Glutathione abc transporter periplasmic binding protein; Part of the ABC transporter complex GsiABCD involved in glutathione import . Binds glutathione
      
 0.706
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.