STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydhFPutative oxidoreductase; May function as oxidoreductase (298 aa)    
Predicted Functional Partners:
ydhL
annotation not available
     0.930
ygjR
Putative nad(p)-dependent dehydrogenase; Belongs to the Gfo/Idh/MocA family
 
  
 0.776
sodC
Superoxide dismutase, cu, zn, periplasmic; Destroys radicals which are normally produced within the cells and which are toxic to biological systems
  
 
 0.767
yneK
annotation not available
      
 0.732
yggP
Putative zinc-binding dehydrogenase yggp; To K.pneumoniae SorE
      
 0.730
yghA
Uncharacterized oxidoreductase YghA; Putative enzyme; Not classified; Belongs to the short-chain dehydrogenases/reductases (SDR) family
      
 0.678
ygcW
Putative deoxygluconate dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family
      
 0.677
ylbF
Putative anaerobic allantoin catabolic oxamate carbamoyltransferase; Uncharacterized protein YlbF; Putative carboxylase
      
 0.674
ydjJ
Putative zn-dependent nad(p)-binding oxidoreductase; Uncharacterized zinc-type alcohol dehydrogenase-like protein YdjJ; Putative oxidoreductase
      
 0.640
ygfF
Putative nad(p)-binding oxidoreductase with nad(p)-binding rossmann-fold domain; Uncharacterized oxidoreductase YgfF; Putative oxidoreductase
      
 0.640
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
Server load: low (4%) [HD]