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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydhLannotation not available (79 aa)    
Predicted Functional Partners:
ydhF
Putative oxidoreductase; May function as oxidoreductase
     0.930
yfbK
Von willebrand factor domain putative lipoprotein; To Synechocystis PCC 6803 sll0103
      
 0.674
yggS
UPF0001 family protein, PLP-binding; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis. May have a carrier function to deliver PLP to the target enzymes or a protective function so that PLP does not inactivate essential lysines in proteins . Does not have amino acid racemase activity
      
 0.674
ybcK
DLP12 prophage; putative recombinase; Uncharacterized protein YbcK; Phage or Prophage Related
      
 0.640
yagM
CP4-6 prophage; protein YagM; Uncharacterized protein YagM; Phage or Prophage Related
      
 0.605
yibA
annotation not available
      
 0.602
yceA
Putative rhodanese-related sulfurtransferase; Belongs to the UPF0176 family
      
 0.600
nemR
Transcriptional repressor for the nemra-gloa operon, quinone-, glyoxal-, and hocl-activated; Involved in response to both electrophiles and reactive chlorine species (RCS) . Represses the transcription of the nemRA-gloA operon by binding to the NemR box . May sense electrophiles, primarily quinones and glyoxals, as redox signals and regulate the redox state by modulating the expression of nemA and gloA . Also uses the oxidation status of HOCl-sensitive cysteine residues to respond to bleach and related RCS . Involved in response to methylglyoxal
       0.595
yfaE
annotation not available
  
     0.561
tehB
Tellurite, selenium methyltransferase, sam-dependent; S-adenosyl-L-methionine dependent methyltransferase that catalyzes the methylation of tellurite and is responsible for tellurite resistance when present in high copy number. Can also methylate selenite and selenium dioxide. Is thus able to detoxify different chalcogens. Cannot methylate arsenic compounds
      
 0.520
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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