STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydhVannotation not available (700 aa)    
Predicted Functional Partners:
ydhW
annotation not available
    0.987
ydhY
Uncharacterized ferredoxin-like protein YdhY; Putative oxidoreductase, Fe-S subunit
   0.973
ydhT
annotation not available
    0.957
ydhU
Putative cytochrome YdhU; Putative enzyme; Not classified
 
    0.927
ydhX
Uncharacterized ferredoxin-like protein YdhX; Putative oxidoreductase, Fe-S subunit
 
   0.867
nrfC
Protein NrfC; Probably involved in the transfer of electrons from the quinone pool to the type-c cytochromes
 
 
 
 0.812
torA
Trimethylamine-N-oxide reductase 1; Reduces trimethylamine-N-oxide (TMAO) into trimethylamine; an anaerobic reaction coupled to energy-yielding reactions
      
 0.809
nrfD
Protein NrfD; Probably involved in the transfer of electrons from the quinone pool to the type-c cytochromes
  
   
 0.785
nrfG
Formate-dependent nitrite reductase complex subunit NrfG; Required for formate-dependent nitrite reduction. Not required for the biosynthesis of any of the c-type cytochromes nor for the secretion of the periplasmic cytochromes
  
   
 0.782
arsC
Arsenate reductase; Reduction of arsenate [As(V)] to arsenite [As(III)]. This protein expands the substrate specificity of ArsAB pump which can extrude arsenite and antimonite to allow for arsenate pumping and resistance (By similarity)
      
 0.628
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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