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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydiYannotation not available (252 aa)    
Predicted Functional Partners:
yedD
annotation not available
  
   
 0.819
yiaF
annotation not available
  
   
 0.729
ygaC
annotation not available
  
     0.705
yebQ
Mfs transporter, dha2 family, multidrug resistance protein; Uncharacterized transporter YebQ; Putative transport protein
  
   
 0.683
yhcN
annotation not available
  
   
 0.652
rcnB
Periplasmic protein involved in nickel/cobalt export; Influences nickel and cobalt homeostasis. May act by modulating RcnA-mediated export of these ions to avoid excess efflux. Not involved in nickel import and does not bind nickel or cobalt ions directly
  
   
 0.627
ybjO
annotation not available
  
   
 0.589
ydgK
annotation not available
  
    0.581
yedL
Gnat family putative n-acetyltransferase; Belongs to the acetyltransferase family
      
 0.571
csiE
annotation not available
  
     0.563
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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