STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydjXTVP38/TMEM64 family inner membrane protein; Belongs to the TVP38/TMEM64 family (236 aa)    
Predicted Functional Partners:
ydjY
annotation not available
 
  
 0.990
ydjZ
TVP38/TMEM64 family inner membrane protein; Belongs to the TVP38/TMEM64 family
 
  
0.944
ynjB
annotation not available
 
     0.938
ynjA
Carboxymuconolactone decarboxylase family protein; To M.tuberculosis Rv2313c
 
     0.896
ynjC
Putative thiamine transport system permease protein; Probably part of the binding-protein-dependent transport system YnjCD. Probably responsible for the translocation of the substrate across the membrane
 
     0.888
yqaA
annotation not available
      
 0.877
yghB
General envelope maintenance protein; May be a membrane transporter required for proton motive force (PMF)-dependent drug efflux. Required, with YqjA, for the proper export of certain periplasmic amidases and, possibly, other Tat substrates. May play a role in determining membrane lipid composition
      
 0.876
yohD
annotation not available
      
 0.875
ynjD
Putative thiamine transport system atp-binding protein; Probably part of a binding-protein-dependent transport system YnjCD. Probably responsible for energy coupling to the transport system
 
     0.862
dedA
annotation not available
      
 0.820
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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