STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ynjAannotation not available (182 aa)    
Predicted Functional Partners:
ynjB
annotation not available
 
    0.900
ydjX
annotation not available
 
     0.896
ynjC
Inner membrane ABC transporter permease protein YnjC; Probably part of the binding-protein-dependent transport system YnjCD. Probably responsible for the translocation of the substrate across the membrane
 
     0.887
ydjY
annotation not available
  
    0.874
ydjZ
annotation not available
 
     0.873
ynjD
Uncharacterized ABC transporter ATP-binding protein YnjD; Probably part of a binding-protein-dependent transport system YnjCD. Probably responsible for energy coupling to the transport system
 
     0.859
ynjE
Thiosulfate sulfurtransferase YnjE; Putative thiosulfate sulfur transferase; Protein involved in sulfur metabolic process
 
    0.838
rplQ
50S ribosomal protein L17; Requires L15 for assembly into the 50S subunit
   
    0.493
xthA
Exodeoxyribonuclease III; Major apurinic-apyrimidinic endonuclease of E.coli. It removes the damaged DNA at cytosines and guanines by cleaving on the 3'-side of the AP site by a beta-elimination reaction. It exhibits 3'-5'-exonuclease, 3'-phosphomonoesterase, 3'-repair diesterase and ribonuclease H activities
       0.476
ynjF
Inner membrane protein YnjF; Putative cytochrome oxidase
 
     0.450
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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