Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| araH | ssuA | b4460 | b0936 | L-arabinose transport system permease protein; Part of the binding-protein-dependent transport system for L- arabinose. Probably responsible for the translocation of the substrate across the membrane | Aliphatic sulfonate abc transporter periplasmic binding protein; Part of a binding-protein-dependent transport system for aliphatic sulfonates. Putative binding protein | 0.455 |
| araH | ybdR | b4460 | b0608 | L-arabinose transport system permease protein; Part of the binding-protein-dependent transport system for L- arabinose. Probably responsible for the translocation of the substrate across the membrane | Uncharacterized zinc-type alcohol dehydrogenase-like protein YbdR; Putative oxidoreductase | 0.605 |
| araH | ybeQ | b4460 | b0644 | L-arabinose transport system permease protein; Part of the binding-protein-dependent transport system for L- arabinose. Probably responsible for the translocation of the substrate across the membrane | Sel1 family TPR-like repeat protein; To E.coli YbeT | 0.584 |
| araH | yddA | b4460 | b1496 | L-arabinose transport system permease protein; Part of the binding-protein-dependent transport system for L- arabinose. Probably responsible for the translocation of the substrate across the membrane | Vitamin b12/bleomycin/antimicrobial peptide transport system atp-binding/permease protein; Inner membrane ABC transporter ATP-binding protein YddA; Putative transport; Not classified | 0.472 |
| araH | ydhV | b4460 | b1673 | L-arabinose transport system permease protein; Part of the binding-protein-dependent transport system for L- arabinose. Probably responsible for the translocation of the substrate across the membrane | annotation not available | 0.679 |
| araH | yeaK | b4460 | b1787 | L-arabinose transport system permease protein; Part of the binding-protein-dependent transport system for L- arabinose. Probably responsible for the translocation of the substrate across the membrane | annotation not available | 0.520 |
| citF | ybdR | b0615 | b0608 | Citrate lyase, citrate-acp transferase (alpha) subunit; Represents a citrate:acetyl-ACP transferase | Uncharacterized zinc-type alcohol dehydrogenase-like protein YbdR; Putative oxidoreductase | 0.519 |
| citF | ybeQ | b0615 | b0644 | Citrate lyase, citrate-acp transferase (alpha) subunit; Represents a citrate:acetyl-ACP transferase | Sel1 family TPR-like repeat protein; To E.coli YbeT | 0.516 |
| citF | ydhV | b0615 | b1673 | Citrate lyase, citrate-acp transferase (alpha) subunit; Represents a citrate:acetyl-ACP transferase | annotation not available | 0.609 |
| citF | yeaK | b0615 | b1787 | Citrate lyase, citrate-acp transferase (alpha) subunit; Represents a citrate:acetyl-ACP transferase | annotation not available | 0.515 |
| ssuA | araH | b0936 | b4460 | Aliphatic sulfonate abc transporter periplasmic binding protein; Part of a binding-protein-dependent transport system for aliphatic sulfonates. Putative binding protein | L-arabinose transport system permease protein; Part of the binding-protein-dependent transport system for L- arabinose. Probably responsible for the translocation of the substrate across the membrane | 0.455 |
| ssuA | ybdR | b0936 | b0608 | Aliphatic sulfonate abc transporter periplasmic binding protein; Part of a binding-protein-dependent transport system for aliphatic sulfonates. Putative binding protein | Uncharacterized zinc-type alcohol dehydrogenase-like protein YbdR; Putative oxidoreductase | 0.571 |
| ssuA | ybeQ | b0936 | b0644 | Aliphatic sulfonate abc transporter periplasmic binding protein; Part of a binding-protein-dependent transport system for aliphatic sulfonates. Putative binding protein | Sel1 family TPR-like repeat protein; To E.coli YbeT | 0.549 |
| ssuA | yddA | b0936 | b1496 | Aliphatic sulfonate abc transporter periplasmic binding protein; Part of a binding-protein-dependent transport system for aliphatic sulfonates. Putative binding protein | Vitamin b12/bleomycin/antimicrobial peptide transport system atp-binding/permease protein; Inner membrane ABC transporter ATP-binding protein YddA; Putative transport; Not classified | 0.416 |
| ssuA | ydhV | b0936 | b1673 | Aliphatic sulfonate abc transporter periplasmic binding protein; Part of a binding-protein-dependent transport system for aliphatic sulfonates. Putative binding protein | annotation not available | 0.633 |
| ssuA | yeaK | b0936 | b1787 | Aliphatic sulfonate abc transporter periplasmic binding protein; Part of a binding-protein-dependent transport system for aliphatic sulfonates. Putative binding protein | annotation not available | 0.510 |
| ybaK | yeaK | b0481 | b1787 | Functions in trans to edit the amino acid from incorrectly charged Cys-tRNA(Pro) via a Cys-tRNA(Pro) deacylase activity. May compensate for the lack of Cys-tRNA(Pro) editing by ProRS. Is also able to deacylate Cys-tRNA(Cys), and displays weak deacylase activity in vitro against Gly-tRNA(Gly), as well as, at higher concentrations, some other correctly charged tRNAs. Unlike some of its orthologs it is not able to remove the amino acid moiety from incorrectly charged Ala- tRNA(Pro) | annotation not available | 0.827 |
| ybdR | araH | b0608 | b4460 | Uncharacterized zinc-type alcohol dehydrogenase-like protein YbdR; Putative oxidoreductase | L-arabinose transport system permease protein; Part of the binding-protein-dependent transport system for L- arabinose. Probably responsible for the translocation of the substrate across the membrane | 0.605 |
| ybdR | citF | b0608 | b0615 | Uncharacterized zinc-type alcohol dehydrogenase-like protein YbdR; Putative oxidoreductase | Citrate lyase, citrate-acp transferase (alpha) subunit; Represents a citrate:acetyl-ACP transferase | 0.519 |
| ybdR | ssuA | b0608 | b0936 | Uncharacterized zinc-type alcohol dehydrogenase-like protein YbdR; Putative oxidoreductase | Aliphatic sulfonate abc transporter periplasmic binding protein; Part of a binding-protein-dependent transport system for aliphatic sulfonates. Putative binding protein | 0.571 |
page 1 of 3
