STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yoaIannotation not available (34 aa)    
Predicted Functional Partners:
yniD
Uncharacterized protein YniD; Pseudogene, ankyrin repeats
      
 0.814
yohO
Belongs to the UPF0387 family
      
 0.814
ylcH
Uncharacterized protein YlcH; Phage or Prophage Related
      
 0.790
yoeI
annotation not available
      
 0.787
yqgB
Belongs to the YqgB family
      
 0.781
ykgO
annotation not available
      
 0.736
ynhF
annotation not available
      
 0.736
ydfB
Uncharacterized protein YdfB; Phage or Prophage Related
      
 0.733
ypdK
annotation not available
      
 0.733
yncL
annotation not available
      
 0.732
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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