STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yebTIntermembrane transport protein yebt; Component of a transport pathway that contributes to membrane integrity . May directly span the intermembrane space, facilitating the transport of substrates across the periplasm (Probable) (877 aa)    
Predicted Functional Partners:
yebS
Intermembrane transport protein yebs; Component of a transport pathway that contributes to membrane integrity
  
 0.998
rsmF
16S rRNA m(5)C1407 methyltransferase, SAM-dependent; Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA
 
    0.906
pqiC
Intermembrane transport lipoprotein pqic; Component of a transport pathway that contributes to membrane integrity
 
  
 0.889
mlaD
Phospholipid/cholesterol/gamma-hch transport system substrate-binding protein; Part of the ABC transporter complex MlaFEDB, which is involved in a phospholipid transport pathway that maintains lipid asymmetry in the outer membrane by retrograde trafficking of phospholipids from the outer membrane to the inner membrane . MlaD functions in substrate binding with strong affinity for phospholipids and modulates ATP hydrolytic activity of the complex
      
 0.889
pqiA
Paraquat-inducible, soxrs-regulated inner membrane protein; Component of a transport pathway that contributes to membrane integrity
  
 0.867
proQ
Rna chaperone, putative prop translation regulator; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities. May regulate ProP activity through an RNA-based, post-transcriptional mechanism
     
 0.710
mlaB
Abc transporter maintaining om lipid asymmetry, cytoplasmic stas component; Part of the ABC transporter complex MlaFEDB, which is involved in a phospholipid transport pathway that maintains lipid asymmetry in the outer membrane by retrograde trafficking of phospholipids from the outer membrane to the inner membrane . MlaB plays critical roles in both the assembly and activity of the complex. May act by modulating MlaF structure and stability
      
 0.607
msrC
Free methionine-(r)-sulfoxide reductase; Catalyzes the reversible oxidation-reduction of the R- enantiomer of free methionine sulfoxide to methionine. Specific for free L-methionine-(R)-S-oxide
       0.585
agaS
Putative galactosamine-6-phosphate deaminase/isomerase; Catalyzes the isomerization-deamination of galactosamine 6- phosphate to form tagatofuranose 6-phosphate and ammonium ion
      
 0.577
mlaA
Intermembrane phospholipid transport system - outer membrane lipoprotein mlaa; Involved in a phospholipid transport pathway that maintains lipid asymmetry in the outer membrane by retrograde trafficking of phospholipids from the outer membrane to the inner membrane
  
   
 0.573
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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