STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yobBUncharacterized protein YobB; Putative enzyme; Not classified (218 aa)    
Predicted Functional Partners:
yccT
DUF2057 domain-containing protein YccT; Belongs to the UPF0319 family
  
  
 0.909
alx
Putative membrane-bound redox modulator alx; Has been proposed to be a redox modulator
   
  
 0.821
exoX
Exodeoxyribonuclease 10; Capable of degrading both single-strand and double-strand DNA with 3' to 5' polarity. Has higher affinity for ssDNA ends than for dsDNA
  
    0.773
yaiV
Putative dna-binding transcriptional regulator ipra; Involved in oxidative stress resistance
  
     0.726
yebZ
Inner membrane protein YebZ; Putative resistance protein; Protein involved in response to drug
 
     0.711
yjdP
Uncharacterized protein YjdP; Conserved hypothetical protein; conserved in EDL933 and CFT073; on opposite strand of the now deaccessioned phnQ (b4091)
  
     0.703
fepE
Regulator of length of o-antigen component of lipopolysaccharide chains; Part of the ferric enterobactin transport system
  
     0.693
ydiE
Hemin uptake protein hemp homolog; To Y.enterocolitica HemP
  
     0.686
wcaD
Putative colanic acid polymerase; Putative enzyme; Phage-related functions and prophages
  
     0.662
yhhZ
Putative hcp1 family polymorphic toxin protein; Belongs to the hcp1 family
  
     0.637
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.