Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| fliZ | yebF | b1921 | b1847 | Dna-binding transcriptional regulator fliz; During the post-exponential growth phase transiently interferes with RpoS (sigma S) activity without affecting expression of RpoS itself. It is probably not an anti-sigma factor as its overexpression is detrimental in rapidly growing cells where there is almost no sigma S factor. There is a strong overlap between Crl- activated genes and FliZ-down-regulated genes. FliZ acts as a timing device for expression of the genes for the adhesive curli fimbriae by indirectly decreasing expression of the curli regulator CsgD | annotation not available | 0.596 |
| ogrK | yebF | b2082 | b1847 | Orphan ogr protein, positive regulator of p2 growth; Cryptic version of the phage P2 OGR protein which acts as an activator of P2 late transcription | annotation not available | 0.602 |
| ogrK | yegR | b2082 | b2085 | Orphan ogr protein, positive regulator of p2 growth; Cryptic version of the phage P2 OGR protein which acts as an activator of P2 late transcription | Uncharacterized protein YegR; Pseudogene, gpD phage P2-like protein D | 0.877 |
| ogrK | yeiH | b2082 | b2158 | Orphan ogr protein, positive regulator of p2 growth; Cryptic version of the phage P2 OGR protein which acts as an activator of P2 late transcription | annotation not available | 0.608 |
| ogrK | ypdI | b2082 | b2376 | Orphan ogr protein, positive regulator of p2 growth; Cryptic version of the phage P2 OGR protein which acts as an activator of P2 late transcription | annotation not available | 0.730 |
| osmY | yebF | b4376 | b1847 | Salt-inducible putative abc transporter periplasmic binding protein; Hyperosmotically inducible periplasmic protein; Protein involved in response to osmotic stress | annotation not available | 0.694 |
| osmY | yjbJ | b4376 | b4045 | Salt-inducible putative abc transporter periplasmic binding protein; Hyperosmotically inducible periplasmic protein; Protein involved in response to osmotic stress | Stress-induced protein, upf0337 family; Belongs to the UPF0337 (CsbD) family | 0.824 |
| yadE | yebF | b0130 | b1847 | Putative polysaccharide deacetylase lipoprotein; Uncharacterized protein YadE | annotation not available | 0.577 |
| yebE | yebF | b1846 | b1847 | annotation not available | annotation not available | 0.641 |
| yebE | yebG | b1846 | b1848 | annotation not available | Dna damage-inducible protein regulated by lexa; Uncharacterized protein YebG; Protein involved in DNA repair and SOS response | 0.549 |
| yebF | fliZ | b1847 | b1921 | annotation not available | Dna-binding transcriptional regulator fliz; During the post-exponential growth phase transiently interferes with RpoS (sigma S) activity without affecting expression of RpoS itself. It is probably not an anti-sigma factor as its overexpression is detrimental in rapidly growing cells where there is almost no sigma S factor. There is a strong overlap between Crl- activated genes and FliZ-down-regulated genes. FliZ acts as a timing device for expression of the genes for the adhesive curli fimbriae by indirectly decreasing expression of the curli regulator CsgD | 0.596 |
| yebF | ogrK | b1847 | b2082 | annotation not available | Orphan ogr protein, positive regulator of p2 growth; Cryptic version of the phage P2 OGR protein which acts as an activator of P2 late transcription | 0.602 |
| yebF | osmY | b1847 | b4376 | annotation not available | Salt-inducible putative abc transporter periplasmic binding protein; Hyperosmotically inducible periplasmic protein; Protein involved in response to osmotic stress | 0.694 |
| yebF | yadE | b1847 | b0130 | annotation not available | Putative polysaccharide deacetylase lipoprotein; Uncharacterized protein YadE | 0.577 |
| yebF | yebE | b1847 | b1846 | annotation not available | annotation not available | 0.641 |
| yebF | yebG | b1847 | b1848 | annotation not available | Dna damage-inducible protein regulated by lexa; Uncharacterized protein YebG; Protein involved in DNA repair and SOS response | 0.933 |
| yebF | yegR | b1847 | b2085 | annotation not available | Uncharacterized protein YegR; Pseudogene, gpD phage P2-like protein D | 0.619 |
| yebF | yeiH | b1847 | b2158 | annotation not available | annotation not available | 0.518 |
| yebF | yjbJ | b1847 | b4045 | annotation not available | Stress-induced protein, upf0337 family; Belongs to the UPF0337 (CsbD) family | 0.593 |
| yebF | ypdI | b1847 | b2376 | annotation not available | annotation not available | 0.604 |
page 1 of 2
