Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| alsR | yecA | b4089 | b1908 | Rpir family transcriptional regulator, repressor of rpib and als operon; Regulatory protein involved in rpiB gene repression. Also involved in als operon repression | annotation not available | 0.605 |
| dnaT | rcnB | b4362 | b2107 | Dna biosynthesis protein (primosomal protein i); This protein is required for primosome-dependent normal DNA replication; it is also involved in inducing stable DNA replication during SOS response. It forms, in concert with DnaB protein and other prepriming proteins DnaC, N, N', N'' a prepriming protein complex on the specific site of the template DNA recognized by protein N' | Periplasmic protein involved in nickel/cobalt export; Influences nickel and cobalt homeostasis. May act by modulating RcnA-mediated export of these ions to avoid excess efflux. Not involved in nickel import and does not bind nickel or cobalt ions directly | 0.650 |
| dnaT | ybdJ | b4362 | b0580 | Dna biosynthesis protein (primosomal protein i); This protein is required for primosome-dependent normal DNA replication; it is also involved in inducing stable DNA replication during SOS response. It forms, in concert with DnaB protein and other prepriming proteins DnaC, N, N', N'' a prepriming protein complex on the specific site of the template DNA recognized by protein N' | annotation not available | 0.740 |
| dnaT | yecA | b4362 | b1908 | Dna biosynthesis protein (primosomal protein i); This protein is required for primosome-dependent normal DNA replication; it is also involved in inducing stable DNA replication during SOS response. It forms, in concert with DnaB protein and other prepriming proteins DnaC, N, N', N'' a prepriming protein complex on the specific site of the template DNA recognized by protein N' | annotation not available | 0.517 |
| dnaT | yfeC | b4362 | b2398 | Dna biosynthesis protein (primosomal protein i); This protein is required for primosome-dependent normal DNA replication; it is also involved in inducing stable DNA replication during SOS response. It forms, in concert with DnaB protein and other prepriming proteins DnaC, N, N', N'' a prepriming protein complex on the specific site of the template DNA recognized by protein N' | Putative dna-binding transcriptional regulator yfec; To E.coli YfiI and P.aeruginosa RluD | 0.771 |
| dnaT | yfeD | b4362 | b2399 | Dna biosynthesis protein (primosomal protein i); This protein is required for primosome-dependent normal DNA replication; it is also involved in inducing stable DNA replication during SOS response. It forms, in concert with DnaB protein and other prepriming proteins DnaC, N, N', N'' a prepriming protein complex on the specific site of the template DNA recognized by protein N' | annotation not available | 0.769 |
| pgsA | yecA | b1912 | b1908 | CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase; This protein catalyzes the committed step to the synthesis of the acidic phospholipids | annotation not available | 0.601 |
| rcnB | dnaT | b2107 | b4362 | Periplasmic protein involved in nickel/cobalt export; Influences nickel and cobalt homeostasis. May act by modulating RcnA-mediated export of these ions to avoid excess efflux. Not involved in nickel import and does not bind nickel or cobalt ions directly | Dna biosynthesis protein (primosomal protein i); This protein is required for primosome-dependent normal DNA replication; it is also involved in inducing stable DNA replication during SOS response. It forms, in concert with DnaB protein and other prepriming proteins DnaC, N, N', N'' a prepriming protein complex on the specific site of the template DNA recognized by protein N' | 0.650 |
| rcnB | ybdJ | b2107 | b0580 | Periplasmic protein involved in nickel/cobalt export; Influences nickel and cobalt homeostasis. May act by modulating RcnA-mediated export of these ions to avoid excess efflux. Not involved in nickel import and does not bind nickel or cobalt ions directly | annotation not available | 0.683 |
| rcnB | yecA | b2107 | b1908 | Periplasmic protein involved in nickel/cobalt export; Influences nickel and cobalt homeostasis. May act by modulating RcnA-mediated export of these ions to avoid excess efflux. Not involved in nickel import and does not bind nickel or cobalt ions directly | annotation not available | 0.457 |
| rcnB | yfeC | b2107 | b2398 | Periplasmic protein involved in nickel/cobalt export; Influences nickel and cobalt homeostasis. May act by modulating RcnA-mediated export of these ions to avoid excess efflux. Not involved in nickel import and does not bind nickel or cobalt ions directly | Putative dna-binding transcriptional regulator yfec; To E.coli YfiI and P.aeruginosa RluD | 0.755 |
| rcnB | yfeD | b2107 | b2399 | Periplasmic protein involved in nickel/cobalt export; Influences nickel and cobalt homeostasis. May act by modulating RcnA-mediated export of these ions to avoid excess efflux. Not involved in nickel import and does not bind nickel or cobalt ions directly | annotation not available | 0.771 |
| ybdJ | dnaT | b0580 | b4362 | annotation not available | Dna biosynthesis protein (primosomal protein i); This protein is required for primosome-dependent normal DNA replication; it is also involved in inducing stable DNA replication during SOS response. It forms, in concert with DnaB protein and other prepriming proteins DnaC, N, N', N'' a prepriming protein complex on the specific site of the template DNA recognized by protein N' | 0.740 |
| ybdJ | rcnB | b0580 | b2107 | annotation not available | Periplasmic protein involved in nickel/cobalt export; Influences nickel and cobalt homeostasis. May act by modulating RcnA-mediated export of these ions to avoid excess efflux. Not involved in nickel import and does not bind nickel or cobalt ions directly | 0.683 |
| ybdJ | yecA | b0580 | b1908 | annotation not available | annotation not available | 0.470 |
| ybdJ | yfeC | b0580 | b2398 | annotation not available | Putative dna-binding transcriptional regulator yfec; To E.coli YfiI and P.aeruginosa RluD | 0.784 |
| ybdJ | yfeD | b0580 | b2399 | annotation not available | annotation not available | 0.774 |
| ychJ | yecA | b1233 | b1908 | annotation not available | annotation not available | 0.878 |
| yecA | alsR | b1908 | b4089 | annotation not available | Rpir family transcriptional regulator, repressor of rpib and als operon; Regulatory protein involved in rpiB gene repression. Also involved in als operon repression | 0.605 |
| yecA | dnaT | b1908 | b4362 | annotation not available | Dna biosynthesis protein (primosomal protein i); This protein is required for primosome-dependent normal DNA replication; it is also involved in inducing stable DNA replication during SOS response. It forms, in concert with DnaB protein and other prepriming proteins DnaC, N, N', N'' a prepriming protein complex on the specific site of the template DNA recognized by protein N' | 0.517 |
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