Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| pliG | yeiB | b1178 | b2152 | Periplasmic inhibitor of g-type lysozyme; Inhibits activity of g-type lysozyme, which confers increased lysozyme tolerance to the bacterium | DUF418 family putative inner membrane protein; Involved in transport | 0.679 |
| pliG | ykgM | b1178 | b0296 | Periplasmic inhibitor of g-type lysozyme; Inhibits activity of g-type lysozyme, which confers increased lysozyme tolerance to the bacterium | annotation not available | 0.554 |
| pliG | zinT | b1178 | b1973 | Periplasmic inhibitor of g-type lysozyme; Inhibits activity of g-type lysozyme, which confers increased lysozyme tolerance to the bacterium | May function as a periplasmic zinc chaperone or mediate direct transport of zinc from the periplasm to the cytoplasm under zinc-limited conditions. Binds zinc with high affinity, and can also bind cadmium, mercury or nickel. Preferentially binds Zn(2+) over Cd(2+). Contains one high affinity metal binding site, and can bind additional metal ions at other sites | 0.842 |
| pliG | znuA | b1178 | b1857 | Periplasmic inhibitor of g-type lysozyme; Inhibits activity of g-type lysozyme, which confers increased lysozyme tolerance to the bacterium | Zn(2(+)) ABC transporter periplasmic binding protein; Involved in the high-affinity zinc uptake transport system | 0.405 |
| purL | zinT | b2557 | b1973 | Phosphoribosylformyl-glycineamide synthetase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate | May function as a periplasmic zinc chaperone or mediate direct transport of zinc from the periplasm to the cytoplasm under zinc-limited conditions. Binds zinc with high affinity, and can also bind cadmium, mercury or nickel. Preferentially binds Zn(2+) over Cd(2+). Contains one high affinity metal binding site, and can bind additional metal ions at other sites | 0.579 |
| yeiB | pliG | b2152 | b1178 | DUF418 family putative inner membrane protein; Involved in transport | Periplasmic inhibitor of g-type lysozyme; Inhibits activity of g-type lysozyme, which confers increased lysozyme tolerance to the bacterium | 0.679 |
| yeiB | ykgM | b2152 | b0296 | DUF418 family putative inner membrane protein; Involved in transport | annotation not available | 0.780 |
| yeiB | zinT | b2152 | b1973 | DUF418 family putative inner membrane protein; Involved in transport | May function as a periplasmic zinc chaperone or mediate direct transport of zinc from the periplasm to the cytoplasm under zinc-limited conditions. Binds zinc with high affinity, and can also bind cadmium, mercury or nickel. Preferentially binds Zn(2+) over Cd(2+). Contains one high affinity metal binding site, and can bind additional metal ions at other sites | 0.607 |
| ygfM | zinT | b2880 | b1973 | annotation not available | May function as a periplasmic zinc chaperone or mediate direct transport of zinc from the periplasm to the cytoplasm under zinc-limited conditions. Binds zinc with high affinity, and can also bind cadmium, mercury or nickel. Preferentially binds Zn(2+) over Cd(2+). Contains one high affinity metal binding site, and can bind additional metal ions at other sites | 0.676 |
| ykgM | pliG | b0296 | b1178 | annotation not available | Periplasmic inhibitor of g-type lysozyme; Inhibits activity of g-type lysozyme, which confers increased lysozyme tolerance to the bacterium | 0.554 |
| ykgM | yeiB | b0296 | b2152 | annotation not available | DUF418 family putative inner membrane protein; Involved in transport | 0.780 |
| ykgM | zinT | b0296 | b1973 | annotation not available | May function as a periplasmic zinc chaperone or mediate direct transport of zinc from the periplasm to the cytoplasm under zinc-limited conditions. Binds zinc with high affinity, and can also bind cadmium, mercury or nickel. Preferentially binds Zn(2+) over Cd(2+). Contains one high affinity metal binding site, and can bind additional metal ions at other sites | 0.974 |
| ykgM | zntR | b0296 | b3292 | annotation not available | Merr family transcriptional regulator, zn(ii)-responsive regulator of znta; Zinc-responsive transcriptional regulator of zntA | 0.573 |
| ykgM | znuA | b0296 | b1857 | annotation not available | Zn(2(+)) ABC transporter periplasmic binding protein; Involved in the high-affinity zinc uptake transport system | 0.843 |
| ykgM | znuB | b0296 | b1859 | annotation not available | Zn(2(+)) ABC transporter membrane subunit; Involved in the high-affinity zinc uptake transport system | 0.501 |
| ykgM | znuC | b0296 | b1858 | annotation not available | Zn(2(+)) ABC transporter ATP binding subunit; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system | 0.621 |
| ykgM | zupT | b0296 | b3040 | annotation not available | Heavy metal divalent cation transporter zupt; Mediates zinc uptake. May also transport other divalent cations such as copper and cadmium ions | 0.460 |
| zinT | pliG | b1973 | b1178 | May function as a periplasmic zinc chaperone or mediate direct transport of zinc from the periplasm to the cytoplasm under zinc-limited conditions. Binds zinc with high affinity, and can also bind cadmium, mercury or nickel. Preferentially binds Zn(2+) over Cd(2+). Contains one high affinity metal binding site, and can bind additional metal ions at other sites | Periplasmic inhibitor of g-type lysozyme; Inhibits activity of g-type lysozyme, which confers increased lysozyme tolerance to the bacterium | 0.842 |
| zinT | purL | b1973 | b2557 | May function as a periplasmic zinc chaperone or mediate direct transport of zinc from the periplasm to the cytoplasm under zinc-limited conditions. Binds zinc with high affinity, and can also bind cadmium, mercury or nickel. Preferentially binds Zn(2+) over Cd(2+). Contains one high affinity metal binding site, and can bind additional metal ions at other sites | Phosphoribosylformyl-glycineamide synthetase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate | 0.579 |
| zinT | yeiB | b1973 | b2152 | May function as a periplasmic zinc chaperone or mediate direct transport of zinc from the periplasm to the cytoplasm under zinc-limited conditions. Binds zinc with high affinity, and can also bind cadmium, mercury or nickel. Preferentially binds Zn(2+) over Cd(2+). Contains one high affinity metal binding site, and can bind additional metal ions at other sites | DUF418 family putative inner membrane protein; Involved in transport | 0.607 |
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