Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
acrR | mqsA | b0464 | b3021 | Transcriptional repressor; Potential regulator protein for the acrAB genes. | Antitoxin for MqsR toxin; Antitoxin component of a type II toxin-antitoxin (TA) system. Labile antitoxin that binds to the MqsR mRNA interferase toxin and neutralizes its endoribonuclease activity. Overexpression prevents MqsR-mediated cessation of cell growth and inhibition of cell proliferation. Initially reported to act as a cotranscription factor with MqsA. Following further experiments, the MqsR-MqsA complex does not bind DNA and all reported data are actually due to a small fraction of free MqsA alone binding DNA. Addition of MqsR to a preformed MqsA-promoter DNA complex causes d [...] | 0.542 |
acrR | yegL | b0464 | b2073 | Transcriptional repressor; Potential regulator protein for the acrAB genes. | VMA domain protein. | 0.542 |
ibsA | ibsB | b4667 | b4668 | Toxic membrane protein. | Toxic membrane protein. | 0.938 |
ibsA | ibsE | b4667 | b4666 | Toxic membrane protein. | Toxic membrane protein. | 0.896 |
ibsA | yegK | b4667 | b2072 | Toxic membrane protein. | Ser/thr phosphatase-related protein; PP2C-like phosphatase that can dephosphorylate YegI. In vitro, can hydrolyze p-nitrophenyl phosphate (pNPP) to p-nitrophenol. | 0.435 |
ibsA | yegL | b4667 | b2073 | Toxic membrane protein. | VMA domain protein. | 0.568 |
ibsB | ibsA | b4668 | b4667 | Toxic membrane protein. | Toxic membrane protein. | 0.938 |
ibsB | ibsE | b4668 | b4666 | Toxic membrane protein. | Toxic membrane protein. | 0.891 |
ibsB | mdtA | b4668 | b2074 | Toxic membrane protein. | Multidrug efflux system, subunit A; The MdtABC tripartite complex confers resistance against novobiocin and deoxycholate. MdtABC requires TolC for its function. Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. | 0.429 |
ibsB | yegL | b4668 | b2073 | Toxic membrane protein. | VMA domain protein. | 0.482 |
ibsE | ibsA | b4666 | b4667 | Toxic membrane protein. | Toxic membrane protein. | 0.896 |
ibsE | ibsB | b4666 | b4668 | Toxic membrane protein. | Toxic membrane protein. | 0.891 |
ibsE | yegL | b4666 | b2073 | Toxic membrane protein. | VMA domain protein. | 0.459 |
ibsE | yqiK | b4666 | b3051 | Toxic membrane protein. | PHB family membrane protein, function unknown; Putative membrane protein. | 0.475 |
mdtA | ibsB | b2074 | b4668 | Multidrug efflux system, subunit A; The MdtABC tripartite complex confers resistance against novobiocin and deoxycholate. MdtABC requires TolC for its function. Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. | Toxic membrane protein. | 0.429 |
mdtA | yegL | b2074 | b2073 | Multidrug efflux system, subunit A; The MdtABC tripartite complex confers resistance against novobiocin and deoxycholate. MdtABC requires TolC for its function. Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. | VMA domain protein. | 0.599 |
mqsA | acrR | b3021 | b0464 | Antitoxin for MqsR toxin; Antitoxin component of a type II toxin-antitoxin (TA) system. Labile antitoxin that binds to the MqsR mRNA interferase toxin and neutralizes its endoribonuclease activity. Overexpression prevents MqsR-mediated cessation of cell growth and inhibition of cell proliferation. Initially reported to act as a cotranscription factor with MqsA. Following further experiments, the MqsR-MqsA complex does not bind DNA and all reported data are actually due to a small fraction of free MqsA alone binding DNA. Addition of MqsR to a preformed MqsA-promoter DNA complex causes d [...] | Transcriptional repressor; Potential regulator protein for the acrAB genes. | 0.542 |
mqsA | yegL | b3021 | b2073 | Antitoxin for MqsR toxin; Antitoxin component of a type II toxin-antitoxin (TA) system. Labile antitoxin that binds to the MqsR mRNA interferase toxin and neutralizes its endoribonuclease activity. Overexpression prevents MqsR-mediated cessation of cell growth and inhibition of cell proliferation. Initially reported to act as a cotranscription factor with MqsA. Following further experiments, the MqsR-MqsA complex does not bind DNA and all reported data are actually due to a small fraction of free MqsA alone binding DNA. Addition of MqsR to a preformed MqsA-promoter DNA complex causes d [...] | VMA domain protein. | 0.542 |
yegI | yegK | b2070 | b2072 | Protein kinase-related putative non-specific DNA-binding protein; Probable serine/threonine kinase. | Ser/thr phosphatase-related protein; PP2C-like phosphatase that can dephosphorylate YegI. In vitro, can hydrolyze p-nitrophenyl phosphate (pNPP) to p-nitrophenol. | 0.956 |
yegI | yegL | b2070 | b2073 | Protein kinase-related putative non-specific DNA-binding protein; Probable serine/threonine kinase. | VMA domain protein. | 0.855 |
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