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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
b2089annotation not available (288 aa)    
Predicted Functional Partners:
b2088
annotation not available
  
 0.925
b1026
IS3 transposase B; IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related
  
   
0.746
b0372
Pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein
  
   
0.732
b0541
IS3 transposase B; IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related
  
   
0.727
insE1
IS3 element protein InsE; Involved in the transposition of the insertion sequence IS3
   
 0.522
b0373
IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related
   
 0.522
b0540
Pseudogene, DLP12 prophage;Phage or Prophage Related
   
 0.522
b1027
IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related
   
 0.522
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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